Detailed information NTG0391879

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: F9230_RS15635
• Genome accession: NZ_CP045099
• Coordinates: 3266532..3267392 (+)
• Length: 286 a.a.
• NCBI ID: WP_218288793.1
• Uniprot ID: -
• Organism: Acinetobacter johnsonii strain AJ14
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3261532..3272392

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F9230_RS15615 (F9230_15665)	secG	3262149..3262478 (-)	330	WP_004692710.1	preprotein translocase subunit SecG	-
F9230_RS15620 (F9230_15670)	tpiA	3262492..3263283 (-)	792	WP_168159358.1	triose-phosphate isomerase	-
F9230_RS15625 (F9230_15675)	pilB	3263563..3265275 (+)	1713	WP_168159359.1	type IV-A pilus assembly ATPase PilB	Machinery gene
F9230_RS15630 (F9230_15680)	pilC	3265306..3266532 (+)	1227	WP_159152946.1	type II secretion system F family protein	Machinery gene
F9230_RS15635 (F9230_15685)	pilD	3266532..3267392 (+)	861	WP_218288793.1	prepilin peptidase	Machinery gene
F9230_RS15640 (F9230_15690)	coaE	3267399..3267998 (+)	600	WP_224216451.1	dephospho-CoA kinase	-
F9230_RS15645 (F9230_15695)	-	3268013..3268930 (-)	918	WP_029574926.1	DMT family transporter	-
F9230_RS15650 (F9230_15700)	rlmB	3268963..3269712 (-)	750	WP_004692717.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
F9230_RS15655 (F9230_15705)	-	3269855..3270178 (-)	324	WP_004692718.1	pyrimidine/purine nucleoside phosphorylase	-
F9230_RS15660 (F9230_15710)	recN	3270571..3272232 (+)	1662	WP_234950795.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31925.32 Da
• Isoelectric Point: 8.2623

>NTDB_id=391879 F9230_RS15635 WP_218288793.1 3266532..3267392(+) (pilD) [Acinetobacter johnsonii strain AJ14]
MQEIISYLINTPMALYFAVGVFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLLLHPEQPIIDETKLSLSKPASTCPKCKSA
IRWYQNVPVISWLLLRGKCGTCHNPISIRYPAIELLTAICALVVVAVFGPTVQMLFGLVLTYILITLTFIDFDTQLLPDR
YTLTLAGLGLGVNSYAIYTTPTAAIWGYIIGFLCLWIVYYLFKLITGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSF
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGN

Nucleotide

• Length: 861 bp

>NTDB_id=391879 F9230_RS15635 WP_218288793.1 3266532..3267392(+) (pilD) [Acinetobacter johnsonii strain AJ14]
ATGCAAGAAATAATTTCCTATCTTATCAATACTCCAATGGCGCTTTATTTCGCCGTTGGAGTTTTTAGTTTGTGCATCGG
TAGTTTTCTAAATGTGGTGATCTATCGCACGCCAAAAATGATGGAACAAGAATGGCGCACCGACTGCCAACTTCTGCTTC
ATCCTGAACAGCCTATTATTGATGAAACGAAACTCTCGTTGAGCAAGCCTGCCTCGACCTGCCCCAAATGCAAAAGTGCC
ATACGCTGGTATCAAAATGTCCCTGTAATTAGCTGGTTACTGCTACGAGGAAAGTGTGGCACTTGTCATAACCCGATCAG
CATTCGCTACCCTGCGATTGAACTCCTGACCGCCATTTGTGCATTGGTCGTGGTTGCAGTCTTTGGTCCAACAGTCCAAA
TGCTGTTCGGTCTCGTACTCACTTACATTTTAATCACCTTAACTTTTATTGATTTTGACACTCAACTTTTACCTGATCGC
TATACCCTCACCCTTGCAGGTCTGGGTTTAGGGGTCAATAGTTATGCGATTTACACCACACCGACAGCGGCCATTTGGGG
TTATATCATTGGCTTTTTATGCTTATGGATCGTGTACTATCTGTTTAAGCTCATCACAGGCAAGGAAGGTATGGGTTATG
GTGACTTTAAGCTACTTGCAGCTTTAGGCGCATGGATGGGCCCTTTGCTACTGCCGCTGATTGTGCTACTTTCCTCTTTT
GTAGGTGCCATTATCGGCATCATCCTGCTCAAAGTGCGCAAAGAAAATCAGCCTTTTGCTTTTGGTCCGTATATTGCCAT
CGCAGGATGGATTGCCTTTTTGTGGGGTGAGCAAATTATGAAAATATACTTAGGCAATTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	78.947	99.65	0.787
pilD	Acinetobacter nosocomialis M2	78.947	99.65	0.787
pilD	Vibrio cholerae strain A1552	54.104	93.706	0.507
pilD	Vibrio campbellii strain DS40M4	51.685	93.357	0.483
pilD	Neisseria gonorrhoeae MS11	45.788	95.455	0.437