Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   HNO12_RS13945 Genome accession   NZ_CP053376
Coordinates   2907048..2907752 (-) Length   234 a.a.
NCBI ID   WP_024085701.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain WF02     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2902048..2912752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNO12_RS13925 (HNO12_13970) cysK 2902058..2903029 (+) 972 WP_020954278.1 cysteine synthase A -
  HNO12_RS13930 (HNO12_13975) pepV 2903067..2904458 (-) 1392 WP_015387836.1 dipeptidase PepV -
  HNO12_RS13935 (HNO12_13980) - 2904554..2905858 (+) 1305 WP_014305604.1 NCS2 family permease -
  HNO12_RS13940 (HNO12_13985) - 2905891..2907051 (-) 1161 WP_015387835.1 ABC transporter permease -
  HNO12_RS13945 (HNO12_13990) pptA 2907048..2907752 (-) 705 WP_024085701.1 ABC transporter ATP-binding protein Regulator
  HNO12_RS13950 (HNO12_13995) - 2908035..2908256 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  HNO12_RS13955 (HNO12_14000) - 2908384..2909103 (-) 720 WP_024085702.1 pseudouridine synthase -
  HNO12_RS13960 (HNO12_14005) - 2909160..2910797 (-) 1638 WP_003152313.1 polysaccharide biosynthesis protein -
  HNO12_RS13965 (HNO12_14010) - 2911003..2912268 (+) 1266 WP_003152311.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 25749.47 Da        Isoelectric Point: 4.5580

>NTDB_id=391877 HNO12_RS13945 WP_024085701.1 2907048..2907752(-) (pptA) [Bacillus amyloliquefaciens strain WF02]
MGELLNANIVCAGYADRPKVISDVSLSVNAGEIAGLIGANGAGKSTVIKAVLGLSRDIEGGIEWHDSSYAYIPERPSFYD
ELTLWEHLELTGSLRGIEGEECRERAGRLLEEFSLTSVKHDLPSGFSKGMQQKLMLIQAFLAKPDIYIIDEPFIGLDPIS
TKLFTDMLIAEKERGAGILMCTHVLDTAEKICDRFYLLDQGALLLQGTLEELQEKTGSRSLLDCFYSAVRSSQR

Nucleotide


Download         Length: 705 bp        

>NTDB_id=391877 HNO12_RS13945 WP_024085701.1 2907048..2907752(-) (pptA) [Bacillus amyloliquefaciens strain WF02]
TTGGGAGAATTATTGAATGCAAACATTGTCTGCGCCGGTTATGCTGACAGGCCGAAGGTGATTTCTGATGTATCTCTGTC
AGTCAACGCTGGTGAAATTGCCGGTTTAATCGGAGCGAACGGCGCGGGGAAAAGTACAGTGATAAAGGCGGTTCTCGGGC
TGTCCCGGGATATTGAAGGCGGTATTGAGTGGCATGATTCGTCTTATGCTTACATACCGGAGCGTCCGAGTTTTTACGAT
GAACTGACGCTTTGGGAGCACCTCGAGCTGACCGGATCATTGCGGGGTATAGAAGGGGAAGAGTGCCGTGAGCGGGCAGG
GCGGCTGCTTGAAGAGTTTTCGCTGACGTCTGTAAAACATGATTTGCCTTCCGGTTTTTCAAAAGGGATGCAGCAAAAGC
TGATGCTCATACAGGCATTTTTGGCGAAGCCGGATATTTACATCATTGATGAGCCTTTTATCGGACTTGATCCGATCTCA
ACGAAGCTGTTTACCGACATGCTGATTGCTGAGAAAGAAAGGGGCGCGGGAATTTTGATGTGCACGCATGTTCTGGATAC
GGCGGAAAAAATCTGCGACCGGTTTTATTTGCTGGATCAGGGCGCTCTGCTTCTTCAAGGCACGTTAGAGGAGCTTCAGG
AAAAAACGGGGAGCCGTTCACTGCTGGATTGCTTTTATTCAGCGGTTCGGAGCAGTCAGCGATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(22-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

45

100

0.462
  pptA Streptococcus thermophilus LMD-9

44.167

100

0.453

Multiple sequence alignment