Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   F9230_RS01305 Genome accession   NZ_CP045099
Coordinates   293280..295358 (+) Length   692 a.a.
NCBI ID   WP_184117977.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 288280..300358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9230_RS01285 (F9230_01290) pilM 290285..291343 (+) 1059 WP_058870420.1 pilus assembly protein PilM Machinery gene
  F9230_RS01290 (F9230_01295) pilN 291343..291999 (+) 657 WP_234951048.1 PilN domain-containing protein Machinery gene
  F9230_RS01295 (F9230_01300) pilO 291996..292733 (+) 738 WP_234951049.1 type 4a pilus biogenesis protein PilO Machinery gene
  F9230_RS01300 (F9230_01305) pilP 292733..293260 (+) 528 WP_094148569.1 pilus assembly protein PilP Machinery gene
  F9230_RS01305 (F9230_01310) pilQ 293280..295358 (+) 2079 WP_184117977.1 type IV pilus secretin PilQ family protein Machinery gene
  F9230_RS01310 (F9230_01315) aroK 295396..295929 (+) 534 WP_062032260.1 shikimate kinase AroK -
  F9230_RS01315 (F9230_01320) aroB 295960..297045 (+) 1086 WP_234951050.1 3-dehydroquinate synthase -
  F9230_RS01320 (F9230_01325) - 297053..297892 (+) 840 WP_234951051.1 hypothetical protein -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 75242.43 Da        Isoelectric Point: 5.1564

>NTDB_id=391851 F9230_RS01305 WP_184117977.1 293280..295358(+) (pilQ) [Acinetobacter johnsonii strain AJ14]
MKNSAKDFIFGDGNTMNHMFRQFSMGAIAMAVMQAASAQVSITNIVPMQIPGQGTEIRVMFNGLPPQPQAYQLEQPSRLV
LDFDKAQQSLKQGSIAVATAEASTVDVTSDAQRSRLTVNLADAGAFTTRVEGNTFILKINSANPALATPVAATRSEQGIS
NIGFQRGSDGEGQVVIDLKGSNTPVDVKQQGSKIVVRVLGNKIPAHLSRRLNVNDFATPVSTIDAQNDGSNGLITIQSNG
SFEYMAYQAEDKLTISLKRPEDKNPMKPKAPSAYTGKKISLDFQDIEVRRVLQLLADFTGINMVASDTVQGNITLRLKDV
PWDQALDIIMKTKNLDKRRNGNVIWIAPVAELIKSEEDEAKAIAQSIKLAPIQTDYIQLSYAKSADVLKLLEDSRDSKGS
ESNRTAGSESLALESLLSARGSAVSDSRTNTLIINDTQQNIDKIRRMIDLLDVAVKQVMVEARIVTASTDFSRELGIKWS
AKKLGNSPVWGGDFQPSFDLGVDLATNTAGTFNFGLLKISDYMLNLELSALQADGHGEVLSAPKVLTGDKQKAYILRGTE
IPYQTWSATEGLKTEFRAANLKLEVTPSITPDGKVQMALMVEKDSIGDITNDGLAIDTSELQTNVLVDDGETVVLGGIFD
DTKRNDYQKVPFLGDLPVVGNLFKNNVKTTIQTELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=391851 F9230_RS01305 WP_184117977.1 293280..295358(+) (pilQ) [Acinetobacter johnsonii strain AJ14]
ATGAAAAATAGTGCTAAAGATTTTATATTTGGGGATGGCAATACGATGAACCATATGTTCCGTCAGTTTTCAATGGGTGC
AATTGCAATGGCGGTGATGCAGGCTGCAAGTGCGCAAGTCAGTATTACGAATATTGTGCCGATGCAAATTCCGGGACAGG
GAACAGAAATTCGTGTCATGTTCAACGGTTTGCCACCACAGCCGCAAGCCTATCAGTTGGAACAGCCATCACGTTTGGTT
TTGGATTTTGATAAAGCACAGCAGAGCCTAAAACAAGGCAGTATTGCGGTAGCAACGGCTGAAGCAAGTACGGTAGATGT
AACTTCAGATGCGCAGCGTTCACGTTTAACTGTAAATTTGGCTGATGCGGGTGCATTTACTACACGTGTTGAAGGTAATA
CCTTTATTCTGAAAATTAACTCAGCGAACCCGGCGCTAGCAACACCTGTTGCTGCGACGCGTTCAGAGCAAGGTATTTCA
AATATTGGCTTCCAGCGTGGTTCAGACGGTGAAGGCCAAGTTGTCATTGATTTAAAAGGTAGCAATACCCCTGTCGATGT
GAAACAACAAGGCAGTAAAATTGTGGTGCGCGTTTTGGGGAATAAAATTCCTGCCCACTTATCACGCCGTCTCAATGTGA
ATGATTTCGCCACGCCTGTATCGACCATCGATGCACAAAACGATGGTAGTAATGGCCTGATCACAATTCAATCGAATGGC
AGTTTTGAATATATGGCTTATCAGGCAGAAGATAAGCTCACCATTAGTTTAAAGCGTCCTGAAGATAAAAATCCAATGAA
ACCTAAAGCACCAAGTGCTTATACGGGCAAAAAGATTTCTTTAGATTTTCAAGATATTGAAGTGCGACGTGTATTACAGC
TCTTAGCTGATTTTACAGGCATTAACATGGTGGCTTCGGACACAGTACAAGGCAATATTACCTTGCGCCTTAAAGATGTT
CCGTGGGATCAAGCACTTGATATTATTATGAAAACCAAGAACTTGGATAAGCGACGAAATGGTAATGTGATTTGGATTGC
TCCTGTAGCTGAACTGATCAAATCTGAGGAAGATGAAGCCAAAGCCATCGCACAAAGCATTAAACTTGCTCCGATTCAAA
CTGATTACATTCAATTGAGTTATGCAAAATCGGCGGATGTGTTGAAATTGTTAGAAGACTCTCGTGACAGTAAAGGGAGT
GAGTCGAATCGTACAGCGGGTTCAGAGTCATTGGCTTTAGAAAGCTTATTAAGTGCTCGTGGTAGTGCGGTTTCTGATTC
GCGTACCAATACGCTAATTATTAATGATACGCAGCAAAATATTGACAAGATTCGTCGCATGATTGACTTGTTGGATGTCG
CAGTGAAACAGGTGATGGTCGAAGCACGTATTGTCACAGCATCAACAGACTTTTCTCGTGAATTGGGGATTAAGTGGAGT
GCGAAGAAGCTGGGCAATAGCCCAGTGTGGGGTGGAGATTTCCAGCCAAGTTTTGATTTGGGTGTGGATTTAGCAACAAA
CACTGCTGGTACGTTTAACTTTGGTTTGTTGAAAATTTCAGACTATATGTTGAACCTTGAGTTAAGCGCACTTCAAGCGG
ATGGTCATGGTGAAGTGTTATCAGCGCCTAAAGTACTTACTGGCGATAAACAGAAAGCCTATATCTTGCGTGGTACAGAG
ATTCCTTATCAAACATGGAGTGCGACGGAAGGTTTAAAAACTGAGTTTCGCGCGGCTAACTTAAAGTTAGAAGTGACGCC
AAGTATTACTCCAGATGGTAAAGTTCAAATGGCGCTCATGGTTGAAAAAGACTCGATTGGTGATATCACCAATGATGGTC
TTGCGATAGATACCAGTGAATTACAAACCAATGTGTTGGTAGACGATGGTGAAACCGTCGTACTGGGTGGTATTTTTGAT
GATACGAAACGTAATGACTATCAAAAAGTACCATTCTTAGGAGATTTGCCTGTGGTGGGTAACTTATTTAAGAATAATGT
CAAAACGACGATACAAACGGAGTTATTGATTTTTGTGACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(305-348)

Bacterial type II and III secretion system protein (Secretin)

(530-684)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-457)

AMIN domain (AMIN)

(55-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

64.91

100

0.676
  pilQ Acinetobacter baumannii strain A118

64.771

100

0.675
  comQ Acinetobacter baylyi ADP1

63.01

100

0.647
  pilQ Pseudomonas aeruginosa PAK

39.162

100

0.392
  pilQ Legionella pneumophila strain Lp02

37.446

99.566

0.373
  pilQ Legionella pneumophila strain ERS1305867

37.722

97.688

0.368
  pilQ Neisseria gonorrhoeae strain FA1090

35.18

100

0.367

Multiple sequence alignment