Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GBN67_RS13930 Genome accession   NZ_CP045051
Coordinates   2881854..2883080 (+) Length   408 a.a.
NCBI ID   WP_010325767.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ312     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2876854..2888080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBN67_RS13885 (GBN67_13900) rimP 2877219..2877743 (-) 525 WP_004692708.1 ribosome maturation factor RimP -
  GBN67_RS13915 (GBN67_13930) secG 2878697..2879026 (-) 330 WP_004692710.1 preprotein translocase subunit SecG -
  GBN67_RS13920 (GBN67_13935) tpiA 2879040..2879831 (-) 792 WP_010325769.1 triose-phosphate isomerase -
  GBN67_RS13925 (GBN67_13940) pilB 2880111..2881823 (+) 1713 WP_234963132.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GBN67_RS13930 (GBN67_13945) pilC 2881854..2883080 (+) 1227 WP_010325767.1 type II secretion system F family protein Machinery gene
  GBN67_RS13935 (GBN67_13950) pilD 2883080..2883940 (+) 861 WP_234963133.1 prepilin peptidase Machinery gene
  GBN67_RS13940 (GBN67_13955) coaE 2883947..2884546 (+) 600 WP_062035173.1 dephospho-CoA kinase -
  GBN67_RS13945 (GBN67_13960) - 2884561..2885478 (-) 918 WP_029574926.1 DMT family transporter -
  GBN67_RS13950 (GBN67_13965) rlmB 2885511..2886148 (-) 638 Protein_2703 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  GBN67_RS13955 (GBN67_13970) - 2886290..2886613 (-) 324 WP_125280995.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44814.23 Da        Isoelectric Point: 9.7992

>NTDB_id=391543 GBN67_RS13930 WP_010325767.1 2881854..2883080(+) (pilC) [Acinetobacter johnsonii strain AJ312]
MAVKKAQMMPTFNYEGIDRKGAKIKGELPARNLALAKVTLRKQGITIKSIREKKKNILEGILKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAVYK
EKSELLKQKIKKAMKYPATVVVVAVIVTIILMVKVVPVFQELFSSFGADLPAFTQMVVNMSEWMQKYWFILIIVVGVVIT
ALLETKKRSKKFRDMLDKAALKAPIFGDLVYKAIIARYSRTLSTTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRATNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTAMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=391543 GBN67_RS13930 WP_010325767.1 2881854..2883080(+) (pilC) [Acinetobacter johnsonii strain AJ312]
ATGGCTGTCAAAAAAGCACAGATGATGCCAACCTTCAATTATGAAGGGATTGATCGTAAAGGGGCAAAAATTAAAGGGGA
ATTGCCTGCACGTAACCTTGCCCTCGCCAAAGTTACTTTGCGCAAACAAGGGATTACCATCAAGAGTATTCGAGAAAAGA
AAAAGAATATTCTTGAAGGCATATTGAAGAAAAAAGTGACCACACTGGACATCACGATTTTCACCCGACAGCTCGCAACC
ATGATGAAAGCGGGTGTACCATTGGTACAAGGCTTTGAAATTGTGGCTGAAGGCTTGGAAAACCCGTCTATGCGTGAAGT
TGTCCTCGGCATTAAAGGTGAAGTTGAGGGTGGTAATACCTTTGCTGGAGCACTCAAAAAATATCCTCAATATTTCGACA
ACTTATTCTGTTCATTGGTTGAATCAGGCGAACAATCAGGTGCGCTTGAGACCATGCTGGACCGTGTAGCGGTCTATAAA
GAAAAAAGTGAATTGTTAAAGCAAAAAATTAAAAAGGCCATGAAATACCCTGCAACCGTGGTTGTGGTTGCGGTGATCGT
GACTATTATTTTGATGGTCAAAGTCGTCCCCGTTTTCCAAGAACTATTTAGTTCCTTTGGTGCAGACTTACCCGCATTCA
CCCAAATGGTGGTAAATATGTCCGAATGGATGCAGAAATACTGGTTCATTTTAATTATTGTCGTTGGTGTTGTGATTACA
GCTTTACTCGAAACCAAAAAACGCAGTAAAAAGTTTCGTGACATGTTGGATAAAGCTGCACTCAAAGCCCCGATTTTTGG
TGATTTAGTCTACAAAGCGATTATCGCACGCTATAGCCGTACGCTGTCTACCACCTTTGCTGCGGGTGTACCTTTAATTG
ATGCCCTCGAGTCTACAGCGGGTGCAACCAATAACGTAGTCTATGAAGAAGCCGTGATGAAAATCCGTGAAGATGTCGCA
ACAGGACAACAACTTCAATTCGCAATGCGTGCCACCAATAAATTTCCATCGATGGCAGTACAAATGGTAGCGATTGGTGA
AGAATCTGGTGCTCTCGATGCCATGCTGGATAAAGTTGCAACCCACTATGAAAATGAAGTCGATAATGCGGTGGATGGCT
TAACGGCAATGATGGAACCTCTGATCATGGCGGTCTTGGGTGTACTTGTGGGTGGCCTAGTGATTGCCATGTATCTACCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.725

100

0.887
  pilC Acinetobacter baylyi ADP1

82.108

100

0.821
  pilC Pseudomonas stutzeri DSM 10701

61.481

99.265

0.61
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria gonorrhoeae MS11

46.985

97.549

0.458
  pilG Neisseria meningitidis 44/76-A

46.985

97.549

0.458
  pilC Vibrio cholerae strain A1552

43.137

100

0.431
  pilC Vibrio campbellii strain DS40M4

41.912

100

0.419
  pilC Thermus thermophilus HB27

37.157

98.284

0.365

Multiple sequence alignment