Detailed information NTG0391544

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GBN67_RS13935
• Genome accession: NZ_CP045051
• Coordinates: 2883080..2883940 (+)
• Length: 286 a.a.
• NCBI ID: WP_234963133.1
• Uniprot ID: -
• Organism: Acinetobacter johnsonii strain AJ312
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2878080..2888940

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GBN67_RS13915 (GBN67_13930)	secG	2878697..2879026 (-)	330	WP_004692710.1	preprotein translocase subunit SecG	-
GBN67_RS13920 (GBN67_13935)	tpiA	2879040..2879831 (-)	792	WP_010325769.1	triose-phosphate isomerase	-
GBN67_RS13925 (GBN67_13940)	pilB	2880111..2881823 (+)	1713	WP_234963132.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GBN67_RS13930 (GBN67_13945)	pilC	2881854..2883080 (+)	1227	WP_010325767.1	type II secretion system F family protein	Machinery gene
GBN67_RS13935 (GBN67_13950)	pilD	2883080..2883940 (+)	861	WP_234963133.1	prepilin peptidase	Machinery gene
GBN67_RS13940 (GBN67_13955)	coaE	2883947..2884546 (+)	600	WP_062035173.1	dephospho-CoA kinase	-
GBN67_RS13945 (GBN67_13960)	-	2884561..2885478 (-)	918	WP_029574926.1	DMT family transporter	-
GBN67_RS13950 (GBN67_13965)	rlmB	2885511..2886148 (-)	638	Protein_2703	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
GBN67_RS13955 (GBN67_13970)	-	2886290..2886613 (-)	324	WP_125280995.1	pyrimidine/purine nucleoside phosphorylase	-
GBN67_RS13960 (GBN67_13975)	recN	2887006..2888667 (+)	1662	WP_234963134.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32004.39 Da
• Isoelectric Point: 8.0620

>NTDB_id=391544 GBN67_RS13935 WP_234963133.1 2883080..2883940(+) (pilD) [Acinetobacter johnsonii strain AJ312]
MQEIISYLINTPMALYFAVGVFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLLLHPEQPIIDETKLTLSKPASTCPKCKSA
IHWYQNIPVMSWFLLRGKCGTCHNPISIRYPAIELLTAICALVVVAVFGPTIQMLFGLVLTYILIALTFIDFDTQLLPDR
YTLTLAGLGLGVNSYAIYTTPTAAIWGYIIGFLCLWIVYYLFKFITGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSF
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKIYLGN

Nucleotide

• Length: 861 bp

>NTDB_id=391544 GBN67_RS13935 WP_234963133.1 2883080..2883940(+) (pilD) [Acinetobacter johnsonii strain AJ312]
ATGCAAGAAATAATTTCCTATCTGATCAATACTCCAATGGCGCTTTATTTCGCCGTTGGAGTTTTTAGTTTGTGCATCGG
TAGTTTTCTAAATGTAGTGATCTATCGCACGCCAAAAATGATGGAACAAGAATGGCGCACCGACTGCCAACTTCTACTTC
ATCCCGAGCAACCGATTATTGATGAAACGAAACTCACGTTGAGTAAGCCTGCCTCAACCTGTCCAAAATGCAAAAGTGCC
ATACACTGGTATCAAAATATCCCTGTGATGAGTTGGTTCCTGCTACGAGGAAAGTGTGGCACTTGCCATAATCCGATCAG
CATTCGCTACCCTGCGATTGAACTCCTGACCGCCATTTGTGCTTTGGTCGTGGTTGCTGTCTTTGGCCCAACAATCCAAA
TGTTGTTTGGTCTCGTACTCACTTATATTTTAATCGCCTTAACCTTTATTGATTTTGACACTCAACTTTTACCTGATCGC
TATACCCTCACCCTTGCAGGTCTGGGTTTAGGGGTCAATAGTTATGCGATTTACACCACACCGACAGCGGCCATTTGGGG
TTATATCATTGGCTTTTTATGCTTATGGATCGTGTACTATCTGTTTAAGTTCATCACAGGCAAGGAAGGTATGGGTTATG
GTGACTTTAAGCTACTTGCAGCTTTAGGCGCATGGATGGGCCCTTTGCTACTGCCGCTGATTGTGCTACTTTCCTCTTTT
GTAGGTGCCATTATCGGCATCATCCTGCTCAAAGTGCGCAAAGAAAATCAGCCTTTTGCTTTTGGTCCGTATATTGCCAT
CGCAGGATGGATTGCCTTTTTGTGGGGTGAGCAAATTATGAAAATATACTTAGGCAATTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	79.298	99.65	0.79
pilD	Acinetobacter nosocomialis M2	79.298	99.65	0.79
pilD	Vibrio cholerae strain A1552	53.731	93.706	0.503
pilD	Vibrio campbellii strain DS40M4	51.504	93.007	0.479
pilD	Neisseria gonorrhoeae MS11	45.421	95.455	0.434