Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | F7984_RS17870 | Genome accession | NZ_CP044545 |
| Coordinates | 3724125..3724499 (-) | Length | 124 a.a. |
| NCBI ID | WP_140461880.1 | Uniprot ID | - |
| Organism | Pradoshia sp. D12 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3719125..3729499
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F7984_RS17855 (F7984_17855) | - | 3721968..3722198 (-) | 231 | WP_140461878.1 | bacteriocin leader domain-containing protein | - |
| F7984_RS17860 (F7984_17860) | - | 3722390..3722671 (-) | 282 | WP_140461879.1 | mersacidin family lantibiotic | - |
| F7984_RS17865 (F7984_17865) | - | 3723940..3724128 (-) | 189 | WP_066105730.1 | hypothetical protein | - |
| F7984_RS17870 (F7984_17870) | ssbB | 3724125..3724499 (-) | 375 | WP_140461880.1 | single-stranded DNA-binding protein | Machinery gene |
| F7984_RS17875 (F7984_17875) | - | 3724759..3725169 (+) | 411 | WP_139892094.1 | YwpF family protein | - |
| F7984_RS17880 (F7984_17880) | - | 3725204..3725590 (-) | 387 | WP_140461881.1 | hypothetical protein | - |
| F7984_RS17885 (F7984_17885) | - | 3725942..3727015 (+) | 1074 | WP_375138416.1 | SDR family oxidoreductase | - |
| F7984_RS17890 (F7984_17890) | fabZ | 3727093..3727527 (-) | 435 | WP_140461883.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| F7984_RS17895 (F7984_17895) | - | 3728232..3728519 (-) | 288 | WP_066105709.1 | DNA-directed RNA polymerase subunit beta | - |
| F7984_RS17900 (F7984_17900) | - | 3728532..3729377 (-) | 846 | WP_140461884.1 | flagellar hook-basal body protein | - |
Sequence
Protein
Download Length: 124 a.a. Molecular weight: 13858.60 Da Isoelectric Point: 7.8470
>NTDB_id=390935 F7984_RS17870 WP_140461880.1 3724125..3724499(-) (ssbB) [Pradoshia sp. D12]
MLNQVALVGRLTKDPDLRYTPEGKAVSNITLAVTRNFKNADGEYGTDFVNCTIWNRAAENTASYCQKGSVVSIVGRIHTR
NYENPEGKRTYVTEVIVESVNFLDRKRVNNLHEGSLETNAVPIL
MLNQVALVGRLTKDPDLRYTPEGKAVSNITLAVTRNFKNADGEYGTDFVNCTIWNRAAENTASYCQKGSVVSIVGRIHTR
NYENPEGKRTYVTEVIVESVNFLDRKRVNNLHEGSLETNAVPIL
Nucleotide
Download Length: 375 bp
>NTDB_id=390935 F7984_RS17870 WP_140461880.1 3724125..3724499(-) (ssbB) [Pradoshia sp. D12]
ATGTTAAATCAGGTTGCGCTTGTTGGAAGGCTGACGAAGGATCCTGATCTGCGTTATACACCGGAAGGCAAAGCTGTATC
AAACATTACTTTGGCCGTTACGAGGAATTTTAAGAATGCAGATGGCGAGTATGGGACGGACTTTGTAAACTGCACAATTT
GGAATCGGGCAGCTGAAAATACAGCATCCTATTGTCAAAAAGGTTCTGTAGTCAGTATTGTTGGAAGAATTCATACACGT
AATTATGAGAATCCAGAAGGTAAACGTACGTATGTAACAGAAGTTATAGTGGAAAGTGTTAACTTTTTAGATCGTAAACG
GGTGAATAACCTTCATGAAGGCAGTCTGGAAACGAACGCAGTGCCTATTTTATGA
ATGTTAAATCAGGTTGCGCTTGTTGGAAGGCTGACGAAGGATCCTGATCTGCGTTATACACCGGAAGGCAAAGCTGTATC
AAACATTACTTTGGCCGTTACGAGGAATTTTAAGAATGCAGATGGCGAGTATGGGACGGACTTTGTAAACTGCACAATTT
GGAATCGGGCAGCTGAAAATACAGCATCCTATTGTCAAAAAGGTTCTGTAGTCAGTATTGTTGGAAGAATTCATACACGT
AATTATGAGAATCCAGAAGGTAAACGTACGTATGTAACAGAAGTTATAGTGGAAAGTGTTAACTTTTTAGATCGTAAACG
GGTGAATAACCTTCATGAAGGCAGTCTGGAAACGAACGCAGTGCCTATTTTATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
65.094 |
85.484 |
0.556 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
85.484 |
0.508 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50 |
91.935 |
0.46 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
46.903 |
91.129 |
0.427 |
| ssbA | Streptococcus mutans UA159 |
41.129 |
100 |
0.411 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
42.478 |
91.129 |
0.387 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
41.593 |
91.129 |
0.379 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
41.593 |
91.129 |
0.379 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
41.593 |
91.129 |
0.379 |
| ssbB/cilA | Streptococcus mitis SK321 |
41.593 |
91.129 |
0.379 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
40.708 |
91.129 |
0.371 |