Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FSA28_RS08870 Genome accession   NZ_CP044495
Coordinates   1765576..1766070 (-) Length   164 a.a.
NCBI ID   WP_002261867.1    Uniprot ID   A0AAX1K2T1
Organism   Streptococcus mutans strain UA140     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1760576..1771070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA28_RS08840 (FSA28_1532) - 1761196..1762140 (+) 945 WP_002291766.1 magnesium transporter CorA family protein -
  FSA28_RS08845 (FSA28_1533) - 1762421..1763083 (+) 663 WP_002291768.1 DUF1129 domain-containing protein -
  FSA28_RS08850 (FSA28_1534) hdrR 1763222..1763578 (+) 357 WP_002291770.1 LytTR family transcriptional regulator HdrR Regulator
  FSA28_RS08855 (FSA28_1535) hdrM 1763575..1764261 (+) 687 WP_002291772.1 hdrR negative regulator HdrM Regulator
  FSA28_RS08860 (FSA28_1536) - 1764269..1764988 (-) 720 WP_002270704.1 TraX family protein -
  FSA28_RS08865 (FSA28_1537) rpsR 1765307..1765546 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  FSA28_RS08870 (FSA28_1538) ssbA 1765576..1766070 (-) 495 WP_002261867.1 single-stranded DNA-binding protein Machinery gene
  FSA28_RS08875 (FSA28_1539) rpsF 1766088..1766378 (-) 291 WP_002261866.1 30S ribosomal protein S6 -
  FSA28_RS08880 (FSA28_1540) - 1766534..1766779 (-) 246 WP_002263367.1 hypothetical protein -
  FSA28_RS08885 (FSA28_1541) - 1767084..1767254 (+) 171 WP_002269894.1 hypothetical protein -
  FSA28_RS08890 (FSA28_1542) mutY 1768325..1769470 (+) 1146 WP_002267522.1 A/G-specific adenine glycosylase -
  FSA28_RS08895 (FSA28_1543) - 1769662..1770711 (-) 1050 WP_002280328.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18331.97 Da        Isoelectric Point: 4.7187

>NTDB_id=390456 FSA28_RS08870 WP_002261867.1 1765576..1766070(-) (ssbA) [Streptococcus mutans strain UA140]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINIVIWRQQAENLANWAKKGTLLGITGRIQTR
NYENQQGQRVYVTEVVADNFQILESRATREGQSNSYNAGGNNNFGGNNFSSQGSSQSQTPNFARDESPFGDSNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=390456 FSA28_RS08870 WP_002261867.1 1765576..1766070(-) (ssbA) [Streptococcus mutans strain UA140]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACTCGTGATGCTGAGCTCCGTTACACCCCAAGTAATCAAGCTGTGGC
AACTTTTACGCTTGCGGTTAACCGTAATTTTAAAAATCAAAATGGTGAACGTGAAGCTGATTTCATTAACATCGTGATTT
GGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAAAAAAGGGACTCTTTTAGGCATTACTGGTCGAATCCAGACCCGC
AATTATGAAAACCAACAAGGTCAGCGTGTTTACGTCACAGAAGTTGTTGCGGATAATTTCCAAATTTTGGAAAGTCGTGC
TACACGTGAAGGTCAATCAAACAGTTATAATGCTGGTGGTAACAATAACTTTGGCGGAAATAATTTTTCTTCCCAAGGTT
CTTCACAATCTCAAACGCCAAACTTTGCTAGAGATGAAAGTCCATTTGGTGATTCAAATCCTATGGATATTTCAGACGAT
GATCTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.062

100

0.616
  ssb Latilactobacillus sakei subsp. sakei 23K

57.059

100

0.591
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.261

72.561

0.372
  ssb Glaesserella parasuis strain SC1401

32.62

100

0.372
  ssbB Streptococcus sobrinus strain NIDR 6715-7

52.632

69.512

0.366
  ssbB/cilA Streptococcus mitis NCTC 12261

50.42

72.561

0.366
  ssbB/cilA Streptococcus pneumoniae Rx1

50.42

72.561

0.366
  ssbB/cilA Streptococcus pneumoniae D39

50.42

72.561

0.366
  ssbB/cilA Streptococcus pneumoniae R6

50.42

72.561

0.366
  ssbB/cilA Streptococcus mitis SK321

50.42

72.561

0.366

Multiple sequence alignment