Detailed information    

insolico Bioinformatically predicted

Overview

Name   hdrR   Type   Regulator
Locus tag   FSA28_RS08850 Genome accession   NZ_CP044495
Coordinates   1763222..1763578 (+) Length   118 a.a.
NCBI ID   WP_002291770.1    Uniprot ID   -
Organism   Streptococcus mutans strain UA140     
Function   activate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1758222..1768578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA28_RS08835 - 1760575..1760796 (+) 222 WP_019312622.1 hypothetical protein -
  FSA28_RS08840 (FSA28_1532) - 1761196..1762140 (+) 945 WP_002291766.1 magnesium transporter CorA family protein -
  FSA28_RS08845 (FSA28_1533) - 1762421..1763083 (+) 663 WP_002291768.1 DUF1129 domain-containing protein -
  FSA28_RS08850 (FSA28_1534) hdrR 1763222..1763578 (+) 357 WP_002291770.1 LytTR family transcriptional regulator HdrR Regulator
  FSA28_RS08855 (FSA28_1535) hdrM 1763575..1764261 (+) 687 WP_002291772.1 hdrR negative regulator HdrM Regulator
  FSA28_RS08860 (FSA28_1536) - 1764269..1764988 (-) 720 WP_002270704.1 TraX family protein -
  FSA28_RS08865 (FSA28_1537) rpsR 1765307..1765546 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  FSA28_RS08870 (FSA28_1538) ssbA 1765576..1766070 (-) 495 WP_002261867.1 single-stranded DNA-binding protein Machinery gene
  FSA28_RS08875 (FSA28_1539) rpsF 1766088..1766378 (-) 291 WP_002261866.1 30S ribosomal protein S6 -
  FSA28_RS08880 (FSA28_1540) - 1766534..1766779 (-) 246 WP_002263367.1 hypothetical protein -
  FSA28_RS08885 (FSA28_1541) - 1767084..1767254 (+) 171 WP_002269894.1 hypothetical protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 14121.45 Da        Isoelectric Point: 10.3603

>NTDB_id=390454 FSA28_RS08850 WP_002291770.1 1763222..1763578(+) (hdrR) [Streptococcus mutans strain UA140]
MEIHLNPKHQSIEVFLEKEIFFLNIRDILFIEISNRKTYVHTNDKVYKSHLLLRDFKEILPDYFQQIGKSQIANSLEISA
INKSFSSTPKISFRHSSKTTWVSRKYYKELLMKKRSLL

Nucleotide


Download         Length: 357 bp        

>NTDB_id=390454 FSA28_RS08850 WP_002291770.1 1763222..1763578(+) (hdrR) [Streptococcus mutans strain UA140]
ATGGAGATTCACTTAAATCCTAAACATCAGTCAATAGAGGTCTTTTTAGAAAAGGAAATTTTCTTTTTAAATATTAGAGA
TATTCTCTTTATTGAAATCAGCAATCGGAAAACTTATGTTCATACTAATGATAAAGTTTACAAAAGCCATTTGCTTCTGC
GCGATTTCAAAGAAATTTTACCTGATTATTTTCAGCAAATTGGCAAGAGTCAGATTGCCAATAGCCTTGAAATTTCTGCC
ATCAATAAGTCTTTCTCCTCTACCCCCAAAATTAGTTTTAGACATTCATCCAAAACAACTTGGGTATCTCGTAAATACTA
CAAAGAATTACTTATGAAAAAAAGGAGTTTACTATGA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(19-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hdrR Streptococcus mutans UA159

98.305

100

0.983

Multiple sequence alignment