Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   FSC10_RS01720 Genome accession   NZ_CP044463
Coordinates   350664..352772 (+) Length   702 a.a.
NCBI ID   WP_163170793.1    Uniprot ID   A0AAE6WRY3
Organism   Acinetobacter schindleri strain HZE23-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 345664..357772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC10_RS01700 (FSC10_01725) pilM 347708..348766 (+) 1059 WP_004810013.1 pilus assembly protein PilM Machinery gene
  FSC10_RS01705 (FSC10_01730) comN 348766..349407 (+) 642 WP_163169081.1 PilN domain-containing protein Machinery gene
  FSC10_RS01710 (FSC10_01735) comO 349401..350120 (+) 720 WP_026056744.1 type 4a pilus biogenesis protein PilO Machinery gene
  FSC10_RS01715 (FSC10_01740) pilP 350120..350647 (+) 528 WP_004810006.1 pilus assembly protein PilP Machinery gene
  FSC10_RS01720 (FSC10_01745) pilQ 350664..352772 (+) 2109 WP_163170793.1 type IV pilus secretin PilQ family protein Machinery gene
  FSC10_RS01725 (FSC10_01750) aroK 352809..353345 (+) 537 WP_004896271.1 shikimate kinase AroK -
  FSC10_RS01730 (FSC10_01755) aroB 353374..354453 (+) 1080 WP_163170794.1 3-dehydroquinate synthase -
  FSC10_RS01735 (FSC10_01760) - 354467..355309 (+) 843 WP_163170795.1 hypothetical protein -

Sequence

Protein


Download         Length: 702 a.a.        Molecular weight: 76753.84 Da        Isoelectric Point: 5.1479

>NTDB_id=390161 FSC10_RS01720 WP_163170793.1 350664..352772(+) (pilQ) [Acinetobacter schindleri strain HZE23-1]
MNKSFKEFIFGDANTMNHVFRQFSMGAVAIAVMQAASAQVSMTNVVPMQIPGQGTEIRVMFNGLPPQPQAYQLESPSRLI
LDFDKAQQNLKQSSIAVATKEASSVDVTSDAQRARLTVNLADAGAFTTRVEGNTFILKINSTNPVIPVQPVVQQNTQGIT
NIGFQRGAKGEGQVVIDLASGNTPVDVQQQGTKVIVRALGSKIPAHLTRRLNVNDFATPVSTVDAVNQSGSGVITIQASD
SYEYMAYQTDNKLTISLKRPEEKNPLRPKAVQHYTGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKEV
PWDQALDIVLKTKNLDKRRNGNVIWIAPVSELIKAEEEEAKALAQSVKLAPIQTEYMQLSYAKAADIEKLITQNKSAQNS
NNSSNNSTNSSNDDKESLLSQRGSVSIDARTNTLIVNDTQPFIDKIRNMVDLLDVQVKQVMVEARIVTAETNFSRDLGIR
WGLQRNNPSLSAGPNGSNVWGGDYSPKLDLSVDLGTPTAGTFSFGILKISDYMLDLQLTALQSDGMGEVLSAPKILTGDK
QKAYILRGVEIPYQSYSAESGTTTEFKEANLRLEVTPSITPDGKVQMELKIEKDSIGELTSDGPAINTNELQTNVLVNDG
ETVVLGGIFDDFKSNQYQKVPFLGDLPVIGNLFKNNSKVSEQAELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2109 bp        

>NTDB_id=390161 FSC10_RS01720 WP_163170793.1 350664..352772(+) (pilQ) [Acinetobacter schindleri strain HZE23-1]
ATGAATAAAAGTTTTAAAGAATTTATTTTTGGGGATGCTAATACAATGAATCATGTGTTTCGTCAGTTTTCAATGGGGGC
AGTTGCCATTGCTGTTATGCAGGCGGCAAGTGCACAGGTTTCGATGACCAATGTGGTGCCAATGCAAATTCCAGGACAAG
GTACTGAAATTCGTGTGATGTTTAATGGCTTGCCACCTCAACCACAAGCTTATCAATTAGAATCACCATCACGTCTGATT
CTGGATTTTGATAAAGCACAGCAGAATTTAAAGCAAAGCAGTATTGCTGTTGCAACGAAAGAAGCAAGTTCTGTAGATGT
GACTTCAGATGCCCAGCGTGCACGTTTAACTGTGAATCTGGCTGATGCGGGTGCATTTACCACGCGTGTTGAAGGCAATA
CCTTTATTCTAAAAATCAATTCAACCAATCCAGTTATCCCTGTACAGCCAGTCGTACAACAAAATACTCAAGGCATTACC
AATATCGGGTTCCAGCGCGGGGCGAAAGGTGAAGGTCAGGTCGTGATTGATCTGGCGAGTGGTAATACACCGGTTGATGT
GCAACAGCAAGGCACCAAAGTTATTGTACGGGCATTAGGCTCCAAGATCCCGGCACATTTAACCCGTCGTCTGAATGTAA
ATGATTTTGCTACACCTGTTTCGACAGTAGATGCAGTCAACCAGAGTGGATCTGGAGTGATTACCATTCAAGCTTCAGAT
AGCTATGAATACATGGCTTATCAAACCGATAATAAACTGACAATTAGTTTAAAACGCCCAGAAGAGAAAAATCCATTACG
TCCAAAAGCTGTTCAACATTATACGGGTAAGAAAATTTCTTTAGATTTTCAGGATATTGAAGTACGCCGAGTATTACAGC
TGCTAGCAGATTTTACTGACATTAATATGGTTGCAGCAGACAGCGTACAAGGCAATATTACTTTACGTCTTAAGGAAGTG
CCTTGGGATCAGGCTTTAGATATTGTTTTAAAGACTAAGAATTTGGATAAGCGTCGTAATGGTAATGTAATCTGGATAGC
GCCTGTATCTGAGCTCATTAAAGCTGAAGAAGAAGAAGCCAAAGCACTTGCACAAAGTGTAAAGCTTGCTCCTATTCAGA
CAGAGTATATGCAACTCAGTTATGCCAAAGCAGCGGATATTGAAAAACTGATTACACAAAATAAATCAGCGCAAAATTCT
AATAATTCATCAAATAATTCTACAAACAGCTCAAATGATGATAAAGAAAGTTTATTAAGTCAGCGAGGTTCAGTGTCAAT
TGATGCTCGCACCAATACATTGATTGTCAACGACACACAGCCTTTTATCGATAAAATCCGTAATATGGTTGACCTGCTGG
ATGTGCAAGTAAAGCAGGTCATGGTCGAAGCACGTATTGTGACAGCTGAAACTAATTTTTCTCGTGATTTGGGCATACGT
TGGGGATTGCAGCGTAATAATCCTAGTTTAAGCGCTGGTCCTAATGGTTCTAATGTCTGGGGTGGCGATTATTCTCCAAA
ATTAGATTTAAGTGTAGATTTAGGTACCCCTACCGCTGGAACCTTTAGCTTTGGAATATTAAAGATTTCCGATTATATGC
TTGATCTGCAATTAACTGCGCTACAATCTGATGGAATGGGTGAAGTGCTCTCAGCTCCTAAAATTCTTACTGGTGATAAG
CAAAAAGCTTATATCTTAAGAGGGGTAGAAATCCCTTACCAATCATATAGTGCTGAATCTGGTACAACTACTGAGTTTAA
AGAAGCTAATTTAAGGTTAGAAGTTACTCCTAGTATTACACCTGATGGTAAAGTTCAGATGGAACTCAAAATTGAAAAAG
ATTCAATTGGAGAGCTTACCTCTGACGGTCCAGCTATTAACACGAATGAACTGCAAACTAATGTGCTAGTGAATGATGGA
GAGACTGTCGTACTGGGAGGTATTTTTGATGATTTCAAATCAAATCAATACCAAAAAGTGCCTTTTCTTGGAGATTTGCC
TGTTATTGGAAATTTATTCAAGAATAACAGTAAAGTTTCGGAACAAGCCGAGCTCCTGATTTTTGTTACACCTCGAATTG
TTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(540-694)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-459)

AMIN domain (AMIN)

(55-135)

Secretin and TonB N terminus short domain (STN)

(306-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

64.738

100

0.67
  pilQ Acinetobacter baumannii strain A118

64.601

100

0.668
  comQ Acinetobacter baylyi ADP1

63.483

100

0.644
  pilQ Pseudomonas aeruginosa PAK

42.258

98.433

0.416
  pilQ Legionella pneumophila strain Lp02

38.15

98.575

0.376
  pilQ Legionella pneumophila strain ERS1305867

38.338

97.721

0.375
  pilQ Neisseria gonorrhoeae strain FA1090

34.789

100

0.363

Multiple sequence alignment