Detailed information NTG0390160

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: HJD23_RS27960
• Genome accession: NZ_CP053109
• Coordinates: 6221761..6223047 (+)
• Length: 428 a.a.
• NCBI ID: WP_171107385.1
• Uniprot ID: -
• Organism: Streptomyces sp. Z423-1
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 6216761..6228047

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HJD23_RS27930	-	6217792..6217986 (+)	195	WP_141314327.1	hypothetical protein	-
HJD23_RS27945	tig	6218577..6219965 (+)	1389	WP_171107383.1	trigger factor	-
HJD23_RS27950	clpP	6220178..6220783 (+)	606	WP_086603934.1	ATP-dependent Clp protease proteolytic subunit	Regulator
HJD23_RS27955	clpP	6220861..6221568 (+)	708	WP_277347780.1	ATP-dependent Clp protease proteolytic subunit	Regulator
HJD23_RS27960	clpX	6221761..6223047 (+)	1287	WP_171107385.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
HJD23_RS27965	-	6223118..6224086 (-)	969	WP_171107387.1	hypothetical protein	-
HJD23_RS27970	-	6224223..6226847 (+)	2625	WP_171107390.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46783.65 Da
• Isoelectric Point: 4.7809

>NTDB_id=390160 HJD23_RS27960 WP_171107385.1 6221761..6223047(+) (clpX) [Streptomyces sp. Z423-1]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEA
AKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKRELEAKDQFEDVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLKILVEPRNALVKQYQRLFELDGVELDFELEALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVIT
ADVVHSNVNPTLIPRDARGRGTGEQKTA

Nucleotide

• Length: 1287 bp

>NTDB_id=390160 HJD23_RS27960 WP_171107385.1 6221761..6223047(+) (clpX) [Streptomyces sp. Z423-1]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGCGGCAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGCCCCGGTGTGTACATCTGCGACGAGTGCATCGATCTCTGCAACGAGATCATCGAGGAAGAGCTCGCGGAGACCA
GCGAGGTGCGCTGGGAGGAACTGCCCAAGCCGCGCGAGATCTACGAGTTCCTCGAGGGGTACGTGGTCGGCCAGGAGGCG
GCGAAGAAGGCCCTCTCCGTCGCCGTCTACAACCACTACAAACGCGTCCAGGCCGGGGAGAACGGCGGCGCCCAAGGCCG
CGACGACGCCATCGAGTTGGCGAAGTCCAACATCCTGCTGCTGGGCCCCACGGGCTCCGGCAAGACCCTCCTGGCGCAGA
CCCTGGCGCGCATGCTGAACGTCCCGTTCGCCATCGCCGACGCGACGGCGCTGACGGAGGCGGGCTACGTCGGCGAGGAC
GTCGAGAACATCCTGCTGAAGCTGATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCGCGCAAGAGTGAAAACCCGTCCATCACACGGGACGTGAGCGGCGAGGGCGTCCAGCAGGCCC
TGCTCAAGATCCTCGAAGGCACCACGGCCTCGGTCCCGCCGCAGGGCGGCCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTGTTCATCGTGGGCGGTGCCTTCGCCGGGCTGGAGAAGATCATCGAGTCCCGGGCGGGCGC
GAAGGGCATCGGCTTCGGCGCGACGATCCGCTCCAAGCGTGAGCTGGAGGCCAAGGACCAGTTCGAGGACGTCATGCCGG
AGGACCTGGTCAAGTTCGGCATGATCCCGGAGTTCATCGGCCGCCTGCCGGTCATCACCTCCGTCCACAACCTCGACCGC
GAGGCCCTGCTCAAGATCCTCGTCGAGCCGCGCAACGCCCTGGTGAAGCAGTACCAGCGCCTCTTCGAACTCGACGGCGT
GGAACTGGACTTCGAGCTCGAGGCGCTGGAAGCCATCGCCGACCAGGCCATCCTCCGCCAGACCGGCGCGCGGGGCCTCA
GGGCCATCATGGAAGAGGTCCTGATGTCCGTGATGTACGAGGTCCCGTCCCGCAAGGACGTGGCGCGGGTCGTCATCACC
GCGGACGTCGTCCACTCCAACGTCAACCCGACCCTCATCCCGCGGGATGCGCGGGGGCGGGGAACGGGGGAGCAGAAGAC
GGCGTAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.935	93.925	0.591
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.745	96.028	0.526