Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   FSC10_RS01710 Genome accession   NZ_CP044463
Coordinates   349401..350120 (+) Length   239 a.a.
NCBI ID   WP_026056744.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain HZE23-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 344401..355120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSC10_RS01695 (FSC10_01720) ponA 345010..347538 (-) 2529 WP_163170792.1 penicillin-binding protein PBP1a -
  FSC10_RS01700 (FSC10_01725) pilM 347708..348766 (+) 1059 WP_004810013.1 pilus assembly protein PilM Machinery gene
  FSC10_RS01705 (FSC10_01730) comN 348766..349407 (+) 642 WP_163169081.1 PilN domain-containing protein Machinery gene
  FSC10_RS01710 (FSC10_01735) comO 349401..350120 (+) 720 WP_026056744.1 type 4a pilus biogenesis protein PilO Machinery gene
  FSC10_RS01715 (FSC10_01740) pilP 350120..350647 (+) 528 WP_004810006.1 pilus assembly protein PilP Machinery gene
  FSC10_RS01720 (FSC10_01745) pilQ 350664..352772 (+) 2109 WP_163170793.1 type IV pilus secretin PilQ family protein Machinery gene
  FSC10_RS01725 (FSC10_01750) aroK 352809..353345 (+) 537 WP_004896271.1 shikimate kinase AroK -
  FSC10_RS01730 (FSC10_01755) aroB 353374..354453 (+) 1080 WP_163170794.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 26948.52 Da        Isoelectric Point: 4.6463

>NTDB_id=390159 FSC10_RS01710 WP_026056744.1 349401..350120(+) (comO) [Acinetobacter schindleri strain HZE23-1]
MMSEQFDELGQEAVVVPKNKMTVEKFFQQFNTLDPNNYGSWPLAVKITCWVFIVFLVLMLAYFGLIRGKIESITQANAQE
QNLLNEFREKDSKLRNLQQYQQQLQDMEASFNQQLEQLPKETEIPGLVEDINLSGVNAGLKFKNIRLEPEVKQEFFIEQP
ISIEATGDYHAFGSFVSGIAGLSRIVTLHDFTITGTENKEKKTDIPVVDYTLKAKTYRYVGSANSASADTTAANSQGAQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=390159 FSC10_RS01710 WP_026056744.1 349401..350120(+) (comO) [Acinetobacter schindleri strain HZE23-1]
ATCATGAGCGAACAATTTGATGAATTAGGTCAGGAAGCTGTTGTTGTACCAAAAAATAAAATGACGGTAGAAAAATTTTT
TCAGCAATTTAATACCCTCGATCCAAATAACTATGGTAGCTGGCCACTGGCTGTAAAGATTACCTGCTGGGTATTTATTG
TTTTCCTGGTTTTGATGCTGGCTTATTTCGGTCTGATTCGAGGCAAGATTGAATCAATTACTCAGGCCAATGCACAAGAA
CAGAATCTGTTAAATGAATTTCGTGAGAAAGATTCCAAACTGCGCAATTTGCAACAATACCAACAGCAACTTCAGGATAT
GGAAGCAAGCTTTAACCAGCAGCTTGAACAGTTACCAAAGGAAACTGAAATCCCCGGCCTGGTTGAAGACATTAACTTGA
GTGGTGTCAATGCCGGGCTGAAGTTTAAGAATATCCGTCTTGAACCTGAAGTAAAGCAAGAGTTCTTTATTGAACAGCCA
ATTTCGATTGAAGCAACGGGTGATTATCATGCCTTCGGTTCATTTGTCAGCGGTATTGCAGGATTGTCTCGTATCGTGAC
GCTACACGACTTTACGATTACGGGTACTGAAAATAAAGAGAAGAAAACAGATATCCCGGTTGTAGATTATACCTTGAAGG
CAAAAACCTATCGTTATGTCGGTAGTGCCAACTCAGCATCGGCAGATACAACAGCTGCGAATAGTCAGGGGGCACAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

69.362

98.326

0.682
  pilO Acinetobacter baumannii D1279779

68.584

94.561

0.649

Multiple sequence alignment