Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   HJD23_RS27955 Genome accession   NZ_CP053109
Coordinates   6220861..6221568 (+) Length   235 a.a.
NCBI ID   WP_277347780.1    Uniprot ID   -
Organism   Streptomyces sp. Z423-1     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6215861..6226568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HJD23_RS27925 - 6216059..6217471 (+) 1413 WP_171107380.1 DUF6177 family protein -
  HJD23_RS27930 - 6217792..6217986 (+) 195 WP_141314327.1 hypothetical protein -
  HJD23_RS27945 tig 6218577..6219965 (+) 1389 WP_171107383.1 trigger factor -
  HJD23_RS27950 clpP 6220178..6220783 (+) 606 WP_086603934.1 ATP-dependent Clp protease proteolytic subunit Regulator
  HJD23_RS27955 clpP 6220861..6221568 (+) 708 WP_277347780.1 ATP-dependent Clp protease proteolytic subunit Regulator
  HJD23_RS27960 clpX 6221761..6223047 (+) 1287 WP_171107385.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  HJD23_RS27965 - 6223118..6224086 (-) 969 WP_171107387.1 hypothetical protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26185.74 Da        Isoelectric Point: 4.6559

>NTDB_id=390159 HJD23_RS27955 WP_277347780.1 6220861..6221568(+) (clpP) [Streptomyces sp. Z423-1]
MNDFPGSGIYDRMRAVQDMRAPQAQYTGPQAESRYVIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQ
LLCLESMDPDRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPYS
ETGRGQVSDLEIAANEILRMRSQLEEMLAKHSTQSIDKIREDIERDKILTAEDALAYGLIDQIISTRKMNNESVR

Nucleotide


Download         Length: 708 bp        

>NTDB_id=390159 HJD23_RS27955 WP_277347780.1 6220861..6221568(+) (clpP) [Streptomyces sp. Z423-1]
GTGAACGACTTCCCCGGCAGCGGCATCTACGACCGTATGCGCGCCGTCCAGGACATGCGGGCCCCGCAGGCCCAGTACAC
CGGCCCGCAGGCCGAGTCCCGCTACGTCATCCCGCGCTTCGTCGAGCGCACCTCCCAGGGCATCCGCGAGTACGACCCGT
ACGCGAAGCTCTTCGAGGAGCGCGTGATCTTCCTGGGCGTCCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAG
CTGCTGTGCCTTGAGTCGATGGACCCCGACCGGGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCCTTCACCGCGCT
GACGGCGATCTACGACACGATGCAGTTCGTCAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGG
CCGTGCTGCTGGCCGCCGGCACGCCCGGCAAGCGCATGGCGCTGCCGAACGCGCGTGTCCTGATCCACCAGCCGTACAGC
GAGACGGGCCGCGGCCAGGTCTCCGACCTGGAGATCGCCGCGAACGAGATCCTGCGGATGCGCTCGCAGCTGGAGGAGAT
GCTGGCCAAGCACTCCACCCAGTCGATCGACAAGATCCGTGAGGACATCGAGCGCGACAAGATCCTCACCGCCGAGGACG
CGCTGGCGTACGGTCTGATCGACCAGATCATCTCCACGCGCAAGATGAACAACGAGTCGGTCCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(46-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.579

80.851

0.417
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

80

0.4
  clpP Streptococcus mutans UA159

45.545

85.957

0.391
  clpP Streptococcus pyogenes JRS4

46.465

84.255

0.391
  clpP Streptococcus pyogenes MGAS315

46.465

84.255

0.391
  clpP Streptococcus pneumoniae R6

45.408

83.404

0.379
  clpP Streptococcus pneumoniae TIGR4

45.408

83.404

0.379
  clpP Streptococcus pneumoniae Rx1

45.408

83.404

0.379
  clpP Streptococcus pneumoniae D39

45.408

83.404

0.379
  clpP Lactococcus lactis subsp. cremoris KW2

44.059

85.957

0.379
  clpP Streptococcus thermophilus LMG 18311

45.128

82.979

0.374
  clpP Streptococcus thermophilus LMD-9

45.128

82.979

0.374
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.069

85.957

0.37

Multiple sequence alignment