Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   HJD23_RS27950 Genome accession   NZ_CP053109
Coordinates   6220178..6220783 (+) Length   201 a.a.
NCBI ID   WP_086603934.1    Uniprot ID   A0A243RSL2
Organism   Streptomyces sp. Z423-1     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6215178..6225783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HJD23_RS27925 - 6216059..6217471 (+) 1413 WP_171107380.1 DUF6177 family protein -
  HJD23_RS27930 - 6217792..6217986 (+) 195 WP_141314327.1 hypothetical protein -
  HJD23_RS27945 tig 6218577..6219965 (+) 1389 WP_171107383.1 trigger factor -
  HJD23_RS27950 clpP 6220178..6220783 (+) 606 WP_086603934.1 ATP-dependent Clp protease proteolytic subunit Regulator
  HJD23_RS27955 clpP 6220861..6221568 (+) 708 WP_277347780.1 ATP-dependent Clp protease proteolytic subunit Regulator
  HJD23_RS27960 clpX 6221761..6223047 (+) 1287 WP_171107385.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  HJD23_RS27965 - 6223118..6224086 (-) 969 WP_171107387.1 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21269.15 Da        Isoelectric Point: 4.6747

>NTDB_id=390158 HJD23_RS27950 WP_086603934.1 6220178..6220783(+) (clpP) [Streptomyces sp. Z423-1]
MPSAAGEPSIGGGLGDQVYNRLLNERIIFLGQPVDDDIANKITAQLLLLAADPDKDIYLYINSPGGSITAGMAIYDTMQF
IKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTAQHTGQSVE
QITRDSDRDRWFDAFEAKEYGLIDDVIPTAAGMPGGGGTGA

Nucleotide


Download         Length: 606 bp        

>NTDB_id=390158 HJD23_RS27950 WP_086603934.1 6220178..6220783(+) (clpP) [Streptomyces sp. Z423-1]
ATGCCCTCCGCCGCCGGCGAGCCTTCCATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCAACGAGCGGAT
CATCTTCCTCGGCCAGCCGGTCGACGACGACATCGCGAACAAGATCACCGCACAGCTGCTGCTCCTTGCCGCCGACCCGG
ACAAGGACATCTACCTGTACATCAACAGCCCCGGCGGTTCGATCACGGCCGGTATGGCGATCTACGACACCATGCAGTTC
ATCAAGAACGACGTGGTGACCATCGCCATGGGCCTCGCGGCTTCGATGGGCCAGTTCCTGCTCAGCGCGGGCACGCCCGG
CAAGCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCATCAGCCGTCCGCCGGCCTCGCCGGTTCGGCCTCGGACATCA
AGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTCACGGCCCAGCACACCGGGCAGTCGGTCGAG
CAGATCACCCGCGACTCGGACCGCGACCGCTGGTTCGACGCCTTCGAGGCCAAGGAGTACGGCCTCATCGACGACGTCAT
CCCCACGGCCGCCGGCATGCCGGGCGGCGGCGGCACGGGAGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A243RSL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

59.649

85.075

0.507
  clpP Lactococcus lactis subsp. cremoris KW2

54.891

91.542

0.502
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

54.348

91.542

0.498
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.054

92.04

0.498
  clpP Streptococcus mutans UA159

54.913

86.07

0.473
  clpP Streptococcus pyogenes MGAS315

53.179

86.07

0.458
  clpP Streptococcus pyogenes JRS4

53.179

86.07

0.458
  clpP Streptococcus pneumoniae Rx1

52.601

86.07

0.453
  clpP Streptococcus pneumoniae D39

52.601

86.07

0.453
  clpP Streptococcus pneumoniae R6

52.601

86.07

0.453
  clpP Streptococcus pneumoniae TIGR4

52.601

86.07

0.453
  clpP Streptococcus thermophilus LMG 18311

52.601

86.07

0.453
  clpP Streptococcus thermophilus LMD-9

52.601

86.07

0.453

Multiple sequence alignment