Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | FOB78_RS08305 | Genome accession | NZ_CP044090 |
| Coordinates | 1585345..1585740 (-) | Length | 131 a.a. |
| NCBI ID | WP_000282447.1 | Uniprot ID | A0AAV3JLT6 |
| Organism | Streptococcus agalactiae strain FDAARGOS_670 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1539629..1591999 | 1585345..1585740 | within | 0 |
Gene organization within MGE regions
Location: 1539629..1591999
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOB78_RS08020 (FOB78_08020) | - | 1539629..1540651 (+) | 1023 | WP_162841140.1 | IS30 family transposase | - |
| FOB78_RS08030 (FOB78_08030) | - | 1540888..1541169 (-) | 282 | WP_000052406.1 | hypothetical protein | - |
| FOB78_RS08035 (FOB78_08035) | - | 1541203..1541589 (-) | 387 | WP_000259069.1 | hypothetical protein | - |
| FOB78_RS08040 (FOB78_08040) | - | 1541574..1542254 (-) | 681 | WP_001865565.1 | hypothetical protein | - |
| FOB78_RS08045 (FOB78_08045) | - | 1542227..1542787 (-) | 561 | WP_001865562.1 | hypothetical protein | - |
| FOB78_RS08050 (FOB78_08050) | - | 1542787..1543194 (-) | 408 | WP_000749954.1 | hypothetical protein | - |
| FOB78_RS08055 (FOB78_08055) | - | 1543296..1543586 (-) | 291 | WP_000078283.1 | WXG100 family type VII secretion target | - |
| FOB78_RS08060 (FOB78_08060) | - | 1544093..1544380 (+) | 288 | WP_000255538.1 | hypothetical protein | - |
| FOB78_RS08065 (FOB78_08065) | - | 1544370..1544705 (+) | 336 | WP_000384858.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| FOB78_RS08070 (FOB78_08070) | - | 1545010..1545480 (-) | 471 | WP_000130119.1 | hypothetical protein | - |
| FOB78_RS08075 (FOB78_08075) | mobV | 1545648..1546904 (-) | 1257 | WP_000122833.1 | MobV family relaxase | - |
| FOB78_RS08080 (FOB78_08080) | - | 1547220..1547654 (-) | 435 | WP_001220479.1 | hypothetical protein | - |
| FOB78_RS08085 (FOB78_08085) | - | 1547690..1548565 (-) | 876 | WP_000770113.1 | hypothetical protein | - |
| FOB78_RS08090 (FOB78_08090) | - | 1548878..1549507 (-) | 630 | WP_000591149.1 | arsenate reductase family protein | - |
| FOB78_RS08095 (FOB78_08095) | - | 1549511..1549837 (-) | 327 | WP_000384270.1 | replication initiator protein A | - |
| FOB78_RS08100 (FOB78_08100) | - | 1549850..1550080 (-) | 231 | WP_000360142.1 | hypothetical protein | - |
| FOB78_RS08105 (FOB78_08105) | - | 1550091..1550369 (-) | 279 | WP_000134670.1 | hypothetical protein | - |
| FOB78_RS08110 (FOB78_08110) | - | 1550506..1550811 (-) | 306 | WP_000331954.1 | hypothetical protein | - |
| FOB78_RS08115 (FOB78_08115) | - | 1550965..1551441 (+) | 477 | WP_000282761.1 | helix-turn-helix transcriptional regulator | - |
| FOB78_RS08120 (FOB78_08120) | - | 1551506..1552660 (+) | 1155 | WP_000022160.1 | site-specific integrase | - |
| FOB78_RS08130 (FOB78_08130) | rpsI | 1552788..1553180 (-) | 393 | WP_000035940.1 | 30S ribosomal protein S9 | - |
| FOB78_RS08135 (FOB78_08135) | rplM | 1553201..1553647 (-) | 447 | WP_001865567.1 | 50S ribosomal protein L13 | - |
| FOB78_RS11895 | - | 1553872..1553991 (-) | 120 | Protein_1525 | helix-turn-helix transcriptional regulator | - |
| FOB78_RS08150 (FOB78_08150) | - | 1554528..1555388 (-) | 861 | WP_000143135.1 | DegV family protein | - |
| FOB78_RS08155 (FOB78_08155) | - | 1555481..1555999 (-) | 519 | WP_000716636.1 | NYN domain-containing protein | - |
| FOB78_RS08160 (FOB78_08160) | rlmB | 1555996..1556751 (-) | 756 | WP_000178026.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| FOB78_RS08165 (FOB78_08165) | - | 1556854..1557240 (-) | 387 | WP_000568029.1 | Mini-ribonuclease 3 | - |
| FOB78_RS08170 (FOB78_08170) | cysS | 1557233..1558576 (-) | 1344 | WP_000591131.1 | cysteine--tRNA ligase | - |
| FOB78_RS08175 (FOB78_08175) | - | 1558573..1558755 (-) | 183 | WP_000656476.1 | lipoprotein | - |
| FOB78_RS08180 (FOB78_08180) | cysE | 1558765..1559349 (-) | 585 | WP_000539954.1 | serine O-acetyltransferase | - |
| FOB78_RS08185 (FOB78_08185) | - | 1559358..1560110 (-) | 753 | WP_000204782.1 | SseB family protein | - |
| FOB78_RS08190 (FOB78_08190) | pnp | 1560112..1562241 (-) | 2130 | WP_000043847.1 | polyribonucleotide nucleotidyltransferase | - |
| FOB78_RS08195 (FOB78_08195) | rpsO | 1562622..1562891 (-) | 270 | WP_001018249.1 | 30S ribosomal protein S15 | - |
| FOB78_RS08200 (FOB78_08200) | - | 1562979..1564238 (-) | 1260 | WP_001203068.1 | ferric reductase-like transmembrane domain-containing protein | - |
| FOB78_RS08205 (FOB78_08205) | - | 1564347..1565276 (-) | 930 | WP_001203821.1 | transketolase family protein | - |
| FOB78_RS08210 (FOB78_08210) | - | 1565273..1566130 (-) | 858 | WP_000203489.1 | transketolase | - |
| FOB78_RS08215 (FOB78_08215) | - | 1566133..1567488 (-) | 1356 | WP_150352953.1 | PTS ascorbate transporter subunit IIC | - |
| FOB78_RS08220 (FOB78_08220) | - | 1567501..1567785 (-) | 285 | WP_000944235.1 | PTS sugar transporter subunit IIB | - |
| FOB78_RS08225 (FOB78_08225) | - | 1567788..1567988 (-) | 201 | Protein_1541 | PTS sugar transporter subunit IIA | - |
| FOB78_RS08230 (FOB78_08230) | - | 1568083..1569216 (+) | 1134 | WP_000564846.1 | ISAs1-like element IS1548 family transposase | - |
| FOB78_RS08235 (FOB78_08235) | - | 1569230..1571149 (-) | 1920 | WP_000228185.1 | BglG family transcription antiterminator | - |
| FOB78_RS08240 (FOB78_08240) | treC | 1571365..1572990 (-) | 1626 | WP_000151017.1 | alpha,alpha-phosphotrehalase | - |
| FOB78_RS08245 (FOB78_08245) | treP | 1573212..1575242 (-) | 2031 | WP_000434616.1 | PTS system trehalose-specific EIIBC component | - |
| FOB78_RS08250 (FOB78_08250) | - | 1575525..1576151 (-) | 627 | WP_000171309.1 | ABC transporter ATP-binding protein | - |
| FOB78_RS08255 (FOB78_08255) | - | 1576135..1576938 (-) | 804 | WP_000140984.1 | ABC transporter ATP-binding protein | - |
| FOB78_RS08260 (FOB78_08260) | - | 1576950..1577771 (-) | 822 | WP_000603394.1 | ABC transporter permease | - |
| FOB78_RS08265 (FOB78_08265) | - | 1577768..1578745 (-) | 978 | WP_000680645.1 | ABC transporter permease | - |
| FOB78_RS08270 (FOB78_08270) | - | 1578858..1580486 (-) | 1629 | WP_000170507.1 | ABC transporter substrate-binding protein | - |
| FOB78_RS08280 (FOB78_08280) | lrgB | 1580729..1581457 (-) | 729 | WP_000421724.1 | antiholin-like protein LrgB | - |
| FOB78_RS08285 (FOB78_08285) | - | 1581459..1581914 (-) | 456 | WP_000683316.1 | CidA/LrgA family protein | - |
| FOB78_RS08290 (FOB78_08290) | - | 1582084..1582824 (-) | 741 | WP_000697630.1 | LytTR family DNA-binding domain-containing protein | - |
| FOB78_RS08295 (FOB78_08295) | - | 1582805..1584550 (-) | 1746 | WP_000930334.1 | LytS/YhcK type 5TM receptor domain-containing protein | - |
| FOB78_RS08300 (FOB78_08300) | - | 1584577..1585221 (-) | 645 | WP_000416612.1 | HAD family phosphatase | - |
| FOB78_RS08305 (FOB78_08305) | ssbA | 1585345..1585740 (-) | 396 | WP_000282447.1 | single-stranded DNA-binding protein | Machinery gene |
| FOB78_RS08310 (FOB78_08310) | - | 1585821..1586537 (+) | 717 | WP_000186185.1 | class I SAM-dependent methyltransferase | - |
| FOB78_RS08315 (FOB78_08315) | ytpR | 1586591..1587217 (-) | 627 | WP_000578327.1 | YtpR family tRNA-binding protein | - |
| FOB78_RS08320 (FOB78_08320) | - | 1587250..1587573 (-) | 324 | WP_000602781.1 | thioredoxin family protein | - |
| FOB78_RS08325 (FOB78_08325) | - | 1587570..1587854 (-) | 285 | WP_000791272.1 | DUF4651 domain-containing protein | - |
| FOB78_RS08330 (FOB78_08330) | - | 1588015..1588254 (+) | 240 | WP_000660180.1 | hypothetical protein | - |
| FOB78_RS08335 (FOB78_08335) | pepA | 1588439..1589506 (+) | 1068 | WP_001281323.1 | glutamyl aminopeptidase | - |
| FOB78_RS08340 (FOB78_08340) | proC | 1589576..1590346 (+) | 771 | WP_001865901.1 | pyrroline-5-carboxylate reductase | - |
| FOB78_RS08345 (FOB78_08345) | - | 1590367..1591032 (-) | 666 | WP_000008113.1 | CPBP family intramembrane glutamic endopeptidase | - |
| FOB78_RS08350 (FOB78_08350) | - | 1591101..1591556 (-) | 456 | WP_000905673.1 | hypothetical protein | - |
| FOB78_RS08355 (FOB78_08355) | - | 1591597..1591734 (-) | 138 | WP_001865900.1 | hypothetical protein | - |
| FOB78_RS08360 (FOB78_08360) | - | 1591793..1591999 (-) | 207 | WP_000798241.1 | helix-turn-helix transcriptional regulator | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 14774.80 Da Isoelectric Point: 7.0189
>NTDB_id=387629 FOB78_RS08305 WP_000282447.1 1585345..1585740(-) (ssbA) [Streptococcus agalactiae strain FDAARGOS_670]
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWGRLAETLASYGTKGSLISIDGELRTR
KYEKDGQTHYITEVLASSFQLLESRAQRAMRENNVSGDLSDLVLEEEELPF
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWGRLAETLASYGTKGSLISIDGELRTR
KYEKDGQTHYITEVLASSFQLLESRAQRAMRENNVSGDLSDLVLEEEELPF
Nucleotide
Download Length: 396 bp
>NTDB_id=387629 FOB78_RS08305 WP_000282447.1 1585345..1585740(-) (ssbA) [Streptococcus agalactiae strain FDAARGOS_670]
ATGTATAATAAAGTTATTATGATTGGGCGTCTAACAGCAAAGCCTGAGATGGTAAAAACACCAACTGACAAGTCAGTGAC
GCGTGCAACTGTTGCTGTTAATAGACGCTTTAAAGGAAGTAATGGTGAGCGTGAAGCAGATTTTATTAATGTGGTTATGT
GGGGTCGTCTAGCGGAAACCCTTGCGAGCTATGGGACAAAGGGCTCTTTAATTTCAATAGATGGTGAATTGCGTACGCGC
AAGTACGAAAAGGATGGTCAAACGCACTATATCACTGAAGTATTAGCATCATCATTTCAGTTGCTAGAAAGCCGTGCCCA
ACGTGCTATGCGTGAAAATAACGTTTCTGGTGATTTGTCAGATTTAGTATTGGAAGAAGAGGAGCTCCCCTTTTAA
ATGTATAATAAAGTTATTATGATTGGGCGTCTAACAGCAAAGCCTGAGATGGTAAAAACACCAACTGACAAGTCAGTGAC
GCGTGCAACTGTTGCTGTTAATAGACGCTTTAAAGGAAGTAATGGTGAGCGTGAAGCAGATTTTATTAATGTGGTTATGT
GGGGTCGTCTAGCGGAAACCCTTGCGAGCTATGGGACAAAGGGCTCTTTAATTTCAATAGATGGTGAATTGCGTACGCGC
AAGTACGAAAAGGATGGTCAAACGCACTATATCACTGAAGTATTAGCATCATCATTTCAGTTGCTAGAAAGCCGTGCCCA
ACGTGCTATGCGTGAAAATAACGTTTCTGGTGATTTGTCAGATTTAGTATTGGAAGAAGAGGAGCTCCCCTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Streptococcus mutans UA159 |
80.916 |
100 |
0.809 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
77.863 |
100 |
0.779 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
77.863 |
100 |
0.779 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
77.863 |
100 |
0.779 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
77.099 |
100 |
0.771 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
77.099 |
100 |
0.771 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
76.336 |
100 |
0.763 |
| ssbB/cilA | Streptococcus mitis SK321 |
76.336 |
100 |
0.763 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
60.526 |
87.023 |
0.527 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.943 |
80.916 |
0.412 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.018 |
86.26 |
0.397 |