Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FOB40_RS12760 Genome accession   NZ_CP044060
Coordinates   2816978..2818219 (+) Length   413 a.a.
NCBI ID   WP_150389834.1    Uniprot ID   -
Organism   Aeromonas veronii strain FDAARGOS_632     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2811978..2823219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB40_RS12730 (FOB40_12730) ampD 2812307..2812882 (-) 576 WP_150389828.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  FOB40_RS12735 (FOB40_12735) - 2813013..2813483 (+) 471 WP_150389829.1 TIGR02281 family clan AA aspartic protease -
  FOB40_RS12740 (FOB40_12740) nadC 2813487..2814362 (+) 876 WP_150389831.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FOB40_RS12750 (FOB40_12750) - 2814678..2815142 (+) 465 WP_407643249.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FOB40_RS12755 (FOB40_12755) pilB 2815142..2816848 (+) 1707 WP_150389833.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  FOB40_RS12760 (FOB40_12760) pilC 2816978..2818219 (+) 1242 WP_150389834.1 type II secretion system F family protein Machinery gene
  FOB40_RS12765 (FOB40_12765) pilD 2818281..2819153 (+) 873 WP_150389836.1 A24 family peptidase Machinery gene
  FOB40_RS12770 (FOB40_12770) coaE 2819167..2819781 (+) 615 WP_150389838.1 dephospho-CoA kinase -
  FOB40_RS12775 (FOB40_12775) zapD 2819819..2820541 (+) 723 WP_005355104.1 cell division protein ZapD -
  FOB40_RS12780 (FOB40_12780) yacG 2820551..2820745 (+) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  FOB40_RS12785 (FOB40_12785) mutT 2820823..2821227 (-) 405 WP_042053534.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45473.57 Da        Isoelectric Point: 9.6916

>NTDB_id=387261 FOB40_RS12760 WP_150389834.1 2816978..2818219(+) (pilC) [Aeromonas veronii strain FDAARGOS_632]
MATLTKKNNTPKKVFAYRWHGVNRKGQKVSGELQADSINTVKTELRKQGVNVTKVAKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPLYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPVFTQFVIGISRFMQNWWYVFFGGTA
LGIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVIA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=387261 FOB40_RS12760 WP_150389834.1 2816978..2818219(+) (pilC) [Aeromonas veronii strain FDAARGOS_632]
ATGGCAACCCTAACGAAAAAGAACAATACCCCCAAAAAAGTCTTCGCCTACCGCTGGCACGGGGTTAATCGCAAGGGGCA
GAAGGTCTCCGGCGAGCTGCAGGCCGACAGCATCAACACCGTCAAGACCGAACTGCGCAAGCAGGGGGTCAACGTCACCA
AGGTAGCCAAGAAATCCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGATATCGCCATCGTCTCACGC
CAGATCACCACCATGCTCTCCGCCGGCGTACCACTGGTGCAGAGCCTGCAGATCATCGCCCGCAGTCACGAGAAAGCCTC
GATGCGCGAGCTGATGGGGCAGATTGCCGCCGATGTGGAGACCGGTACCCCCATGTCGGAGGCGCTGCGTCGCCATCCCC
TCTACTTTGACGATCTCTACTGCGATCTGGTGGAAGCCGGTGAGCAATCCGGTGCGCTGGAAACCATCTACGACCGTATC
GCCACCTATCGGGAAAAGTCGGAAGCGCTCAAGTCGAAGATCAAGAAGGCGATGTTCTACCCCACCATGGTCATTCTGGT
CGCCATCGTGGTCACCTCCATCCTGCTGCTGTTCGTCATTCCACAGTTCGAGGATATCTTCAAGAGCTTCGGTGCCGAGC
TGCCGGTGTTCACCCAGTTTGTTATCGGCATCTCCCGCTTTATGCAGAACTGGTGGTATGTCTTCTTTGGTGGCACGGCC
CTTGGCATCTTCCTTTACGTGCGGGCCTGGCGGGCCTCCCAGAAGGTGAAAGACAATACCGACAAGTTCGTCCTCACCAT
TCCGGTAGTCGGGATGATCCTGCACAAGGCGGCCATGGCCCGCTTCGCCCGCACCCTGTCTACCACCTTCTCGGCCGGTA
TTCCGCTGGTAGATGCGCTGATTTCGGCAGCAGGTGCCTCCGGTAACTATGTCTATCGCACCGCGGTCATGGCGATCCGC
AACGAGGTGGTGGCCGGTATGCAGATCAACGTGGCGATGCGCACCGTCGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCCGGTGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGATGATC
TGGTCGATGGCCTCACCAGCCTGCTGGAACCCCTCATCATGGTTGTACTCGGGGTGCTGGTCGGCGGCATGGTTATCGCC
ATGTACCTGCCCATCTTCAAGCTTGGCGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.071

95.884

0.547
  pilC Acinetobacter baumannii D1279779

53.98

97.337

0.525
  pilC Acinetobacter baylyi ADP1

52.75

96.852

0.511
  pilC Legionella pneumophila strain ERS1305867

50.739

98.305

0.499
  pilC Vibrio cholerae strain A1552

47.132

97.094

0.458
  pilC Vibrio campbellii strain DS40M4

46.04

97.821

0.45
  pilG Neisseria gonorrhoeae MS11

40.827

93.705

0.383
  pilG Neisseria meningitidis 44/76-A

40.568

93.705

0.38
  pilC Thermus thermophilus HB27

38.25

96.852

0.37

Multiple sequence alignment