Detailed information NTG0387262

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FOB40_RS12765
• Genome accession: NZ_CP044060
• Coordinates: 2818281..2819153 (+)
• Length: 290 a.a.
• NCBI ID: WP_150389836.1
• Uniprot ID: -
• Organism: Aeromonas veronii strain FDAARGOS_632
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2813281..2824153

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FOB40_RS12740 (FOB40_12740)	nadC	2813487..2814362 (+)	876	WP_150389831.1	carboxylating nicotinate-nucleotide diphosphorylase	-
FOB40_RS12750 (FOB40_12750)	-	2814678..2815142 (+)	465	WP_407643249.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
FOB40_RS12755 (FOB40_12755)	pilB	2815142..2816848 (+)	1707	WP_150389833.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
FOB40_RS12760 (FOB40_12760)	pilC	2816978..2818219 (+)	1242	WP_150389834.1	type II secretion system F family protein	Machinery gene
FOB40_RS12765 (FOB40_12765)	pilD	2818281..2819153 (+)	873	WP_150389836.1	A24 family peptidase	Machinery gene
FOB40_RS12770 (FOB40_12770)	coaE	2819167..2819781 (+)	615	WP_150389838.1	dephospho-CoA kinase	-
FOB40_RS12775 (FOB40_12775)	zapD	2819819..2820541 (+)	723	WP_005355104.1	cell division protein ZapD	-
FOB40_RS12780 (FOB40_12780)	yacG	2820551..2820745 (+)	195	WP_005336142.1	DNA gyrase inhibitor YacG	-
FOB40_RS12785 (FOB40_12785)	mutT	2820823..2821227 (-)	405	WP_042053534.1	8-oxo-dGTP diphosphatase MutT	-
FOB40_RS12790 (FOB40_12790)	secA	2821412..2824132 (-)	2721	WP_150389839.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32111.35 Da
• Isoelectric Point: 6.5762

>NTDB_id=387262 FOB40_RS12765 WP_150389836.1 2818281..2819153(+) (pilD) [Aeromonas veronii strain FDAARGOS_632]
MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYHSYFAPDEEAAAPEHYNLMVPRSACPHCGHA
ITALENIPLLSWLWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLASGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGAVIGISLIALHKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide

• Length: 873 bp

>NTDB_id=387262 FOB40_RS12765 WP_150389836.1 2818281..2819153(+) (pilD) [Aeromonas veronii strain FDAARGOS_632]
ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCTTGGCTCTACTTCTCGCTGGTTTTTCTTTTCTCCCTGATGATCGG
CAGCTTCCTTAACGTAGTGATCCACCGCTTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAGTATCACAGCTACTTCG
CCCCCGATGAGGAGGCCGCTGCGCCAGAGCACTACAACCTGATGGTCCCCCGCTCCGCATGCCCTCACTGTGGTCACGCC
ATCACTGCGCTGGAGAACATCCCGCTGCTAAGCTGGCTCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGCCCCCATCTC
GGCCCGCTATCCGCTGGTAGAGCTGCTGACCGCCCTGCTCTCGGTGGCCGTTGCCATGGTCATAACGCCAGGCTGGGGCA
CACTGGCCGCCCTGTTGCTGACCTGGGTGCTGGTCGCCCTCACCTTTATCGATCTCGACAAGATGTTGCTGCCCGACCAG
CTCACCCTGCCACTGCTGTGGGGCGGGCTGCTGTTCAACCTGGCAAGTGGCTTCGTACCGCTGGCGGATGCCGTGATCGG
GGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCTTTCAAGCTGCTAACCGGCAAGGAGGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGTTGGCAGGCGCTGCCCATAATTCTGCTGCTCTCATCTCTG
GTCGGTGCAGTGATCGGCATCAGTCTGATCGCCTTGCACAAACACCATCAGGGCAAGCCCATCCCCTTCGGCCCCTACCT
CGCCATCGCGGGGTGGATTGCGCTGCTATGGGGCGATACCATCACCCGCTGGTATCTCTCGACCCTGCTTTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.279	98.966	0.597
pilD	Vibrio campbellii strain DS40M4	55.749	98.966	0.552
pilD	Acinetobacter nosocomialis M2	53.405	96.207	0.514
pilD	Acinetobacter baumannii D1279779	53.047	96.207	0.51
pilD	Neisseria gonorrhoeae MS11	49.275	95.172	0.469