Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   F2A31_RS14020 Genome accession   NZ_CP043909
Coordinates   3013893..3015119 (+) Length   408 a.a.
NCBI ID   WP_150027058.1    Uniprot ID   A0A5P1UW06
Organism   Acinetobacter suaedae strain C16S1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3008893..3020119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F2A31_RS13985 (F2A31_13985) rimP 3009482..3010006 (-) 525 WP_150027049.1 ribosome maturation factor RimP -
  F2A31_RS14005 (F2A31_14005) secG 3010642..3010971 (-) 330 WP_150027051.1 preprotein translocase subunit SecG -
  F2A31_RS14010 (F2A31_14010) tpiA 3010984..3011775 (-) 792 WP_150027053.1 triose-phosphate isomerase -
  F2A31_RS14015 (F2A31_14015) pilB 3012156..3013868 (+) 1713 WP_150027055.1 type IV-A pilus assembly ATPase PilB Machinery gene
  F2A31_RS14020 (F2A31_14020) pilC 3013893..3015119 (+) 1227 WP_150027058.1 type II secretion system F family protein Machinery gene
  F2A31_RS14025 (F2A31_14025) pilD 3015119..3015979 (+) 861 WP_150027060.1 A24 family peptidase Machinery gene
  F2A31_RS14030 (F2A31_14030) coaE 3015981..3016586 (+) 606 WP_005088002.1 dephospho-CoA kinase -
  F2A31_RS14035 (F2A31_14035) - 3016583..3017494 (-) 912 WP_150027062.1 DMT family transporter -
  F2A31_RS14045 (F2A31_14045) rlmB 3017535..3018281 (-) 747 WP_115736169.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  F2A31_RS14050 (F2A31_14050) - 3018391..3018717 (-) 327 WP_004637677.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44936.40 Da        Isoelectric Point: 9.7487

>NTDB_id=386485 F2A31_RS14020 WP_150027058.1 3013893..3015119(+) (pilC) [Acinetobacter suaedae strain C16S1]
MAAKKAQMMPTFAYEGVDRKGARIKGELPARNMALAKVTLRKQGVTIKNIREKRKNILEGLMKKKVTTLDITVFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGLKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSEILKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSVWMQEYWFILIIVIGAIIA
CFLEAKKRSKKFRDTLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATHYESEVDNAVDGLTAMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=386485 F2A31_RS14020 WP_150027058.1 3013893..3015119(+) (pilC) [Acinetobacter suaedae strain C16S1]
ATGGCAGCTAAAAAAGCGCAAATGATGCCTACTTTTGCTTACGAAGGGGTCGACCGCAAAGGGGCAAGAATTAAAGGGGA
ATTACCAGCACGTAATATGGCTTTAGCCAAAGTCACACTACGTAAACAAGGGGTCACTATCAAGAATATCCGTGAAAAAC
GGAAAAATATTCTTGAAGGTTTAATGAAAAAGAAGGTTACTACCCTTGATATAACGGTGTTTACACGCCAATTGGCAACC
ATGATGAAAGCTGGTGTTCCGTTGGTTCAAGGCTTTGAGATTGTTGCTGAAGGATTAGAAAATCCATCCATGCGCGAAGT
TGTATTGGGACTCAAGGGTGAAGTTGAAGGGGGGAACACCTTTGCAGGTGCATTAAGAAAATATCCACAATACTTTGATA
ATTTATTCTGCTCTTTAGTCGAGTCTGGTGAGCAATCGGGTGCACTAGAAACCATGCTTGATCGTGTCGCAATCTATAAA
GAGAAAAGTGAGATACTCAAACAAAAAATCAAAAAAGCCATGAAATATCCAGCGACAGTCATCGTGGTTGCAGTAATCGT
TACGATTATTTTGATGGTGAAAGTGGTTCCTGTTTTCCAAGATTTGTTTAGCTCATTTGGTGCGGATTTACCTGCTTTCA
CCAAAATGGTGGTGAATATGTCAGTTTGGATGCAAGAGTATTGGTTTATCTTAATTATTGTTATCGGTGCGATTATTGCC
TGTTTTCTTGAAGCAAAAAAACGCAGTAAAAAATTCCGAGATACTCTTGATAAACTTGCATTGAAGCTGCCGATTTTTGG
TGATTTAGTTTATAAAGCAATTATTGCACGTTATAGTCGTACGCTTGCAACAACGTTTGCAGCAGGTGTACCTTTAATTG
ATGCACTCGAGTCAACAGCTGGCGCAACCAACAATGTTGTTTATGAAGAGGCTGTGATGAAAATCCGTGAAGATGTTGCA
ACAGGACAACAATTACAGTTTGCTATGCGCGTTTCCAACCGCTTCCCATCAATGGCAATTCAAATGGTTGCTATTGGCGA
AGAATCAGGAGCCTTAGATAGTATGCTCGATAAAGTGGCAACCCATTATGAAAGTGAAGTTGATAATGCCGTTGATGGCT
TAACGGCTATGATGGAGCCTTTAATTATGGCGATTCTAGGGGTACTTGTGGGTGGTTTGGTTATCGCAATGTATCTTCCA
ATCTTCCAAATGGGTTCTGTGGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P1UW06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

92.647

100

0.926
  pilC Acinetobacter baylyi ADP1

86.52

100

0.865
  pilC Pseudomonas stutzeri DSM 10701

61.425

99.755

0.613
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria gonorrhoeae MS11

46.482

97.549

0.453
  pilG Neisseria meningitidis 44/76-A

46.482

97.549

0.453
  pilC Vibrio cholerae strain A1552

41.769

99.755

0.417
  pilC Vibrio campbellii strain DS40M4

40.098

100

0.402
  pilC Thermus thermophilus HB27

37.157

98.284

0.365

Multiple sequence alignment