Detailed information NTG0386486

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: F2A31_RS14025
• Genome accession: NZ_CP043909
• Coordinates: 3015119..3015979 (+)
• Length: 286 a.a.
• NCBI ID: WP_150027060.1
• Uniprot ID: A0A5P1UVJ6
• Organism: Acinetobacter suaedae strain C16S1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3010119..3020979

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F2A31_RS14005 (F2A31_14005)	secG	3010642..3010971 (-)	330	WP_150027051.1	preprotein translocase subunit SecG	-
F2A31_RS14010 (F2A31_14010)	tpiA	3010984..3011775 (-)	792	WP_150027053.1	triose-phosphate isomerase	-
F2A31_RS14015 (F2A31_14015)	pilB	3012156..3013868 (+)	1713	WP_150027055.1	type IV-A pilus assembly ATPase PilB	Machinery gene
F2A31_RS14020 (F2A31_14020)	pilC	3013893..3015119 (+)	1227	WP_150027058.1	type II secretion system F family protein	Machinery gene
F2A31_RS14025 (F2A31_14025)	pilD	3015119..3015979 (+)	861	WP_150027060.1	A24 family peptidase	Machinery gene
F2A31_RS14030 (F2A31_14030)	coaE	3015981..3016586 (+)	606	WP_005088002.1	dephospho-CoA kinase	-
F2A31_RS14035 (F2A31_14035)	-	3016583..3017494 (-)	912	WP_150027062.1	DMT family transporter	-
F2A31_RS14045 (F2A31_14045)	rlmB	3017535..3018281 (-)	747	WP_115736169.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
F2A31_RS14050 (F2A31_14050)	-	3018391..3018717 (-)	327	WP_004637677.1	pyrimidine/purine nucleoside phosphorylase	-
F2A31_RS14055 (F2A31_14055)	recN	3019051..3020712 (+)	1662	WP_150027064.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32010.45 Da
• Isoelectric Point: 6.4232

>NTDB_id=386486 F2A31_RS14025 WP_150027060.1 3015119..3015979(+) (pilD) [Acinetobacter suaedae strain C16S1]
MQQFLTYFIENPVALYLAVGLFSLCIGSFLNVVIFRTPRMMEQEWQQECQMLLHPKQPIIEEEKLTLSQPASTCPKCHTP
ICWYQNIPVISWLVLRGKCGACQNPISIRYPLIELLTMGCSLVVVAVFGPTLQMLFGLVLTWVLITLTFIDFDTQLLPDR
FTLPLAALGLVINSFAIYTTADAAIWGYVIGFLCLWIVYYLFKIFTGKEGMGYGDFKLLAALGAWMGPMLLPLIVLLSSV
VGAIIGIILLKMRGENQPFAFGPYIAIAGWIAFLWGDQIMKVYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=386486 F2A31_RS14025 WP_150027060.1 3015119..3015979(+) (pilD) [Acinetobacter suaedae strain C16S1]
ATGCAACAATTCTTGACTTATTTTATCGAAAACCCAGTAGCACTTTATCTTGCTGTTGGGCTTTTTAGTTTATGTATTGG
TAGCTTTCTGAATGTTGTTATTTTCCGAACGCCAAGAATGATGGAACAGGAATGGCAACAAGAATGCCAAATGCTACTCC
ATCCAAAACAACCTATCATTGAAGAAGAAAAGCTGACTTTAAGTCAACCCGCATCAACTTGCCCAAAGTGCCACACCCCT
ATCTGCTGGTATCAAAATATCCCAGTGATCAGTTGGTTAGTACTCCGTGGTAAATGCGGTGCCTGTCAAAATCCGATTAG
TATTCGTTACCCATTGATCGAGTTATTGACCATGGGATGCTCTCTAGTGGTCGTTGCTGTTTTTGGGCCTACTCTACAAA
TGCTATTCGGTTTAGTTCTGACTTGGGTGTTAATTACCCTTACTTTTATTGATTTTGATACACAACTGCTTCCAGACCGC
TTTACACTGCCACTGGCAGCACTCGGTTTAGTCATTAATAGTTTTGCAATCTACACCACGGCTGACGCAGCAATTTGGGG
TTATGTGATTGGTTTCCTTTGCCTTTGGATTGTTTATTATCTTTTTAAAATCTTTACTGGCAAAGAAGGTATGGGCTATG
GCGATTTTAAATTACTGGCCGCATTAGGGGCTTGGATGGGTCCAATGCTCTTACCTTTAATTGTTTTACTTTCTTCTGTT
GTTGGTGCAATTATTGGTATCATCTTATTGAAAATGCGGGGTGAAAATCAGCCCTTTGCTTTTGGCCCCTATATTGCAAT
TGCAGGCTGGATCGCATTTTTATGGGGTGATCAAATTATGAAAGTTTATTTAGGTGGCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A5P1UVJ6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	83.217	100	0.832
pilD	Acinetobacter baumannii D1279779	82.168	100	0.822
pilD	Vibrio cholerae strain A1552	55.056	93.357	0.514
pilD	Vibrio campbellii strain DS40M4	53.383	93.007	0.496
pilD	Neisseria gonorrhoeae MS11	46.52	95.455	0.444