Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | F1614_RS01350 | Genome accession | NZ_CP043847 |
| Coordinates | 282298..282615 (+) | Length | 105 a.a. |
| NCBI ID | WP_017464660.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain NCCP 16828 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 277298..287615
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F1614_RS01320 (F1614_01335) | - | 278075..278275 (+) | 201 | WP_002446537.1 | YqgQ family protein | - |
| F1614_RS01325 (F1614_01340) | - | 278275..279261 (+) | 987 | WP_002473556.1 | ROK family glucokinase | - |
| F1614_RS01330 (F1614_01345) | - | 279261..279587 (+) | 327 | WP_001831234.1 | MTH1187 family thiamine-binding protein | - |
| F1614_RS01335 (F1614_01350) | - | 279587..280210 (+) | 624 | WP_002446535.1 | MBL fold metallo-hydrolase | - |
| F1614_RS01340 (F1614_01355) | comGA | 280267..281241 (+) | 975 | WP_199253293.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| F1614_RS01345 (F1614_01360) | comGB | 281213..282280 (+) | 1068 | WP_158171704.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| F1614_RS01350 (F1614_01365) | comGC | 282298..282615 (+) | 318 | WP_017464660.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| F1614_RS01355 (F1614_01370) | comGD | 282605..283042 (+) | 438 | WP_002473772.1 | competence type IV pilus minor pilin ComGD | - |
| F1614_RS01360 (F1614_01375) | - | 283029..283322 (+) | 294 | WP_001831116.1 | hypothetical protein | - |
| F1614_RS01365 (F1614_01380) | - | 283246..283737 (+) | 492 | WP_017464661.1 | competence type IV pilus minor pilin ComGF | - |
| F1614_RS01370 (F1614_01390) | - | 283902..284414 (+) | 513 | WP_002497929.1 | shikimate kinase | - |
| F1614_RS01375 (F1614_01395) | gcvT | 284632..285723 (+) | 1092 | WP_017464662.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| F1614_RS01380 (F1614_01400) | gcvPA | 285743..287089 (+) | 1347 | WP_002473606.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 105 a.a. Molecular weight: 11477.55 Da Isoelectric Point: 9.7429
>NTDB_id=386235 F1614_RS01350 WP_017464660.1 282298..282615(+) (comGC) [Staphylococcus epidermidis strain NCCP 16828]
MKTLKLLKKTRAFTLIEMLLVLLIISLLLILIIPNIAKQTSHIQSTGCDAQVKMVNSQIEAYALKHNRNPSNVDDLVSDG
FIKEGQKTCKSGQTISIANGEAVAN
MKTLKLLKKTRAFTLIEMLLVLLIISLLLILIIPNIAKQTSHIQSTGCDAQVKMVNSQIEAYALKHNRNPSNVDDLVSDG
FIKEGQKTCKSGQTISIANGEAVAN
Nucleotide
Download Length: 318 bp
>NTDB_id=386235 F1614_RS01350 WP_017464660.1 282298..282615(+) (comGC) [Staphylococcus epidermidis strain NCCP 16828]
ATGAAAACATTGAAATTATTGAAAAAAACACGAGCATTTACCTTGATAGAAATGCTTTTAGTATTACTAATAATAAGTTT
ATTGTTAATACTTATAATTCCAAATATTGCAAAACAAACATCTCATATTCAGTCAACTGGATGTGATGCTCAAGTTAAAA
TGGTAAACAGTCAAATAGAAGCCTACGCTTTAAAACACAATCGCAACCCTTCTAATGTTGATGATTTGGTTTCAGATGGT
TTTATAAAAGAAGGACAAAAAACATGTAAATCCGGTCAGACAATTAGTATTGCAAATGGAGAGGCAGTTGCCAATTAA
ATGAAAACATTGAAATTATTGAAAAAAACACGAGCATTTACCTTGATAGAAATGCTTTTAGTATTACTAATAATAAGTTT
ATTGTTAATACTTATAATTCCAAATATTGCAAAACAAACATCTCATATTCAGTCAACTGGATGTGATGCTCAAGTTAAAA
TGGTAAACAGTCAAATAGAAGCCTACGCTTTAAAACACAATCGCAACCCTTCTAATGTTGATGATTTGGTTTCAGATGGT
TTTATAAAAGAAGGACAAAAAACATGTAAATCCGGTCAGACAATTAGTATTGCAAATGGAGAGGCAGTTGCCAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
86.275 |
97.143 |
0.838 |
| comGC | Staphylococcus aureus N315 |
86.275 |
97.143 |
0.838 |
| comGC/cglC | Streptococcus mitis SK321 |
44.66 |
98.095 |
0.438 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
44.681 |
89.524 |
0.4 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
44.681 |
89.524 |
0.4 |
| comGC/cglC | Streptococcus pneumoniae D39 |
44.681 |
89.524 |
0.4 |
| comGC/cglC | Streptococcus pneumoniae R6 |
44.681 |
89.524 |
0.4 |
| comYC | Streptococcus mutans UA159 |
47.674 |
81.905 |
0.39 |
| comYC | Streptococcus mutans UA140 |
47.674 |
81.905 |
0.39 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
46.512 |
81.905 |
0.381 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
47.561 |
78.095 |
0.371 |
| comYC | Streptococcus suis isolate S10 |
50 |
74.286 |
0.371 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
50 |
74.286 |
0.371 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
41.758 |
86.667 |
0.362 |