Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   F0H32_RS15140 Genome accession   NZ_CP043540
Coordinates   3529165..3530424 (+) Length   419 a.a.
NCBI ID   WP_058362151.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. undulosa strain LW16     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3515270..3528781 3529165..3530424 flank 384


Gene organization within MGE regions


Location: 3515270..3530424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0H32_RS15085 (F0H32_15085) - 3515270..3517564 (+) 2295 WP_139115860.1 hypothetical protein -
  F0H32_RS21260 - 3517677..3517982 (-) 306 WP_003466368.1 PQQ-binding-like beta-propeller repeat protein -
  F0H32_RS21265 - 3517931..3519229 (-) 1299 WP_230938577.1 hypothetical protein -
  F0H32_RS15095 (F0H32_15095) sucD 3519515..3520387 (-) 873 WP_003466372.1 succinate--CoA ligase subunit alpha -
  F0H32_RS15100 (F0H32_15100) sucC 3520411..3521574 (-) 1164 WP_003466374.1 ADP-forming succinate--CoA ligase subunit beta -
  F0H32_RS15105 (F0H32_15105) - 3521815..3523428 (+) 1614 WP_003466376.1 ATP-binding protein -
  F0H32_RS15110 (F0H32_15110) pilR 3523503..3524891 (+) 1389 WP_058362147.1 sigma-54 dependent transcriptional regulator Regulator
  F0H32_RS15115 (F0H32_15115) - 3525080..3525262 (+) 183 WP_003466380.1 YhfG family protein -
  F0H32_RS15120 (F0H32_15120) - 3525259..3525711 (+) 453 WP_230811680.1 Fic family protein -
  F0H32_RS15125 (F0H32_15125) pilB 3525886..3527622 (-) 1737 WP_058362148.1 type IV-A pilus assembly ATPase PilB Machinery gene
  F0H32_RS15130 (F0H32_15130) - 3527810..3528115 (+) 306 WP_230938578.1 hypothetical protein -
  F0H32_RS15135 (F0H32_15135) - 3528371..3528781 (-) 411 WP_058362150.1 pilin -
  F0H32_RS15140 (F0H32_15140) pilC 3529165..3530424 (+) 1260 WP_058362151.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45531.70 Da        Isoelectric Point: 10.1825

>NTDB_id=384914 F0H32_RS15140 WP_058362151.1 3529165..3530424(+) (pilC) [Xanthomonas translucens pv. undulosa strain LW16]
MSATRSAVSKEPVARNISQQVPFVWEGTDKRGIKMKGEQTAKNANLLRAELRRQGITPSVVKPKPKPLFGAAGNKISAKD
IAFFSRQMATMMKSGVPIVGSLEIIGSGHKNPRMKKMVGQVRTDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKENTEALKGKIKKALFYPAAVMAVALLVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVAASRFMVAYWWL
LLIVLVGSIVGFVFAYKRSPSMQHGMDRLILKVPIIGQIMHNSSVARFSRTLGVTFRAGVPLVEALDIVAGATGNSVYEK
AVLRMRDDVSVGYPVNVAMKQANLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVVGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=384914 F0H32_RS15140 WP_058362151.1 3529165..3530424(+) (pilC) [Xanthomonas translucens pv. undulosa strain LW16]
ATGTCCGCAACTCGTAGCGCAGTATCCAAAGAACCCGTCGCACGCAATATCAGCCAGCAGGTCCCGTTCGTCTGGGAGGG
GACGGACAAGCGCGGCATCAAGATGAAGGGCGAGCAGACCGCCAAGAACGCCAACCTGCTGCGTGCGGAATTGCGTCGCC
AGGGCATCACGCCGTCGGTGGTCAAGCCGAAACCCAAACCCCTGTTCGGCGCTGCCGGCAACAAGATCAGCGCGAAGGAC
ATTGCCTTCTTCAGCCGCCAGATGGCGACCATGATGAAGTCGGGCGTCCCCATCGTGGGATCGCTGGAAATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGGCCAGGTCCGCACCGACATCGAAGGCGGCTCGTCGCTCTATGAAG
CGATCAGCAAGCATCCGGTCCAGTTCGACGAACTCTACCGCAACCTGGTCAAGGCCGGCGAAGGCGCCGGCGTCCTCGAA
ACCGTGCTGGAGACGGTAGCCACCTACAAGGAAAACACCGAGGCGCTGAAGGGCAAGATCAAGAAAGCCTTGTTCTATCC
GGCCGCTGTCATGGCGGTGGCGCTGCTGGTCAGCTCGATCCTGCTGGTGTGGGTGGTCCCGCAATTCGAGGATGTCTTCA
AAGGGTTTGGCGCGGAGTTACCCGCATTCACTCAGATGATCGTCGCCGCTTCACGCTTTATGGTGGCTTATTGGTGGCTC
CTGCTGATCGTGCTGGTTGGCAGCATCGTCGGCTTCGTCTTCGCCTACAAGCGCTCGCCGTCGATGCAGCACGGCATGGA
CCGACTGATCCTGAAGGTGCCGATCATCGGCCAGATCATGCACAACAGCTCCGTGGCCCGCTTCTCGCGGACACTGGGCG
TCACCTTCCGCGCCGGCGTCCCGTTGGTGGAAGCGCTGGACATCGTCGCCGGCGCCACCGGCAACAGCGTCTACGAAAAG
GCCGTGCTGCGCATGCGTGACGACGTGTCGGTGGGCTACCCCGTCAACGTGGCGATGAAGCAGGCCAACCTGTTTCCGCA
CATGGTCATCCAGATGACCGCCATCGGCGAAGAAGCCGGTGCGCTGGATGCGATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTGAACAATGCGGTCGATGCGTTGAGCAGCCTGCTGGAACCGCTGATCATGGTGTTCATTGGTACCATCGTC
GGCGGCATGGTCGTCGGCATGTACCTGCCCATCTTCAAGCTGGCCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.535

94.511

0.506
  pilC Legionella pneumophila strain ERS1305867

51.733

96.42

0.499
  pilC Acinetobacter baylyi ADP1

51.117

96.181

0.492
  pilC Acinetobacter baumannii D1279779

50.62

96.181

0.487
  pilG Neisseria gonorrhoeae MS11

42.965

94.988

0.408
  pilC Vibrio cholerae strain A1552

42.222

96.659

0.408
  pilG Neisseria meningitidis 44/76-A

42.462

94.988

0.403
  pilC Vibrio campbellii strain DS40M4

40.05

94.749

0.379
  pilC Thermus thermophilus HB27

38.75

95.465

0.37

Multiple sequence alignment