Detailed information NTG0384912

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: F0H32_RS15110
• Genome accession: NZ_CP043540
• Coordinates: 3523503..3524891 (+)
• Length: 462 a.a.
• NCBI ID: WP_058362147.1
• Uniprot ID: -
• Organism: Xanthomonas translucens pv. undulosa strain LW16
• Function: regulate pilin expression (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3515270..3528781	3523503..3524891	within	0

Gene organization within MGE regions

Location: 3515270..3528781

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F0H32_RS15085 (F0H32_15085)	-	3515270..3517564 (+)	2295	WP_139115860.1	hypothetical protein	-
F0H32_RS21260	-	3517677..3517982 (-)	306	WP_003466368.1	PQQ-binding-like beta-propeller repeat protein	-
F0H32_RS21265	-	3517931..3519229 (-)	1299	WP_230938577.1	hypothetical protein	-
F0H32_RS15095 (F0H32_15095)	sucD	3519515..3520387 (-)	873	WP_003466372.1	succinate--CoA ligase subunit alpha	-
F0H32_RS15100 (F0H32_15100)	sucC	3520411..3521574 (-)	1164	WP_003466374.1	ADP-forming succinate--CoA ligase subunit beta	-
F0H32_RS15105 (F0H32_15105)	-	3521815..3523428 (+)	1614	WP_003466376.1	ATP-binding protein	-
F0H32_RS15110 (F0H32_15110)	pilR	3523503..3524891 (+)	1389	WP_058362147.1	sigma-54 dependent transcriptional regulator	Regulator
F0H32_RS15115 (F0H32_15115)	-	3525080..3525262 (+)	183	WP_003466380.1	YhfG family protein	-
F0H32_RS15120 (F0H32_15120)	-	3525259..3525711 (+)	453	WP_230811680.1	Fic family protein	-
F0H32_RS15125 (F0H32_15125)	pilB	3525886..3527622 (-)	1737	WP_058362148.1	type IV-A pilus assembly ATPase PilB	Machinery gene
F0H32_RS15130 (F0H32_15130)	-	3527810..3528115 (+)	306	WP_230938578.1	hypothetical protein	-
F0H32_RS15135 (F0H32_15135)	-	3528371..3528781 (-)	411	WP_058362150.1	pilin	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 49878.36 Da
• Isoelectric Point: 6.7309

>NTDB_id=384912 F0H32_RS15110 WP_058362147.1 3523503..3524891(+) (pilR) [Xanthomonas translucens pv. undulosa strain LW16]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDLHVLRGLVKHALELNNRERAAPPAPPPEQASRLLGASAAMDVLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLAMQVKLLRAIQEKSARPVGASIEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRDRGGDLP
QLAAAILARLAKSHGRATPLLSPSALDALNRYPFPGNVRELENILERALAMAEEDQISAADLHLPQPGNSARVAAEAAPA
LPPGVVDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1389 bp

>NTDB_id=384912 F0H32_RS15110 WP_058362147.1 3523503..3524891(+) (pilR) [Xanthomonas translucens pv. undulosa strain LW16]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTGGCGAGCAATCCCTATGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCGCCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTCAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACCTCCACGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACCGCGAACGCGCCGCGCCGCCAGCGCCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGCCTCGGCGGCAATGGACGTGCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCCTCGGCGAATCCGGCGTCGGCAAGGAGTTGGTCGCGCGCACCATCCATGAGCAGGGCGC
ACGCGCGGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTAATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACCAGGCCGGACTGTTCCAGGCCGCGCACGGCGGCACGCTGTTCCTGGAC
GAAGTGGCCGAGCTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGCGCGCCCGGTGGGCGC
CTCGATCGAGGTACCCACCGACGTGCGCATCCTCTCGGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAATGTGATCGAACTGCGCGTGCCGCCGCTGCGCGACCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCACGGCTGGCCAAGAGCCATGGCCGGGCCACCCCGCTGCTGTCGCCGTCGGCGCTGGA
CGCGCTGAACCGCTACCCCTTCCCTGGCAACGTGCGCGAACTGGAGAACATCCTTGAGCGCGCCCTGGCAATGGCCGAAG
AGGACCAGATCAGCGCCGCCGATCTGCACCTGCCGCAGCCCGGCAACAGCGCCCGCGTCGCGGCCGAAGCCGCGCCCGCG
CTGCCGCCCGGCGTGGTCGACATCGACCCGACCTCCTCGGCCCTGCCCTCCTACATCGAACAGCTCGAGCGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCCCAGCTCGGCATCACCTTCCGTGCGCTGCGCT
ACAAACTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (8-114)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Bacterial regulatory protein, Fis family (HTH_8) (419-459)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.092	99.351	0.617
pilR	Acinetobacter baumannii strain A118	46.983	100	0.472