Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FYK34_RS18920 Genome accession   NZ_CP043473
Coordinates   3998271..3999353 (-) Length   360 a.a.
NCBI ID   WP_149299220.1    Uniprot ID   A0A5C1DNC2
Organism   Chromobacterium paludis strain IIBBL 257-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3993271..4004353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYK34_RS18895 (FYK34_18895) - 3993838..3994218 (+) 381 WP_149299209.1 diacylglycerol kinase -
  FYK34_RS18900 (FYK34_18900) - 3994305..3994673 (+) 369 WP_149299211.1 DUF1622 domain-containing protein -
  FYK34_RS18905 (FYK34_18905) - 3994675..3995052 (-) 378 WP_149299213.1 hypothetical protein -
  FYK34_RS18910 (FYK34_18910) topA 3995315..3997624 (-) 2310 WP_149299216.1 type I DNA topoisomerase -
  FYK34_RS18915 (FYK34_18915) - 3997781..3998239 (-) 459 WP_149299218.1 DUF494 family protein -
  FYK34_RS18920 (FYK34_18920) dprA 3998271..3999353 (-) 1083 WP_149299220.1 DNA-processing protein DprA Machinery gene
  FYK34_RS18925 (FYK34_18925) - 3999350..4000387 (-) 1038 WP_149299223.1 LysM peptidoglycan-binding domain-containing protein -
  FYK34_RS18930 (FYK34_18930) def 4000513..4001016 (+) 504 WP_103321703.1 peptide deformylase -
  FYK34_RS18935 (FYK34_18935) fmt 4001088..4002011 (+) 924 WP_149299225.1 methionyl-tRNA formyltransferase -
  FYK34_RS18940 (FYK34_18940) htpX 4002060..4002917 (+) 858 WP_149299227.1 zinc metalloprotease HtpX -
  FYK34_RS18945 (FYK34_18945) rsmB 4002989..4004233 (+) 1245 WP_149299230.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 36972.13 Da        Isoelectric Point: 5.4067

>NTDB_id=384400 FYK34_RS18920 WP_149299220.1 3998271..3999353(-) (dprA) [Chromobacterium paludis strain IIBBL 257-1]
MSDAARDWLRLALTPGIGPVGFLKLIDAFGSAGSAVAARAAQTEKLVGREAAEALQNGAAAEAVDAALAWAEGDGCHLLT
LLDDDYPPQLAEAASPPPLLFARGRRELLARPMLAVVGSRAATPQGKRNAEDFAAALAAHGYTIVSGLASGIDAAAHQGA
LAHPASTVAVIGTGIDRVYPASNRQLAHRIAAEGLILSEFPLGFGPLSGNFPRRNRIIAGLARGCLVVEAGTASGSLISA
RLAMESNREVMAIPGSIHNAQARGCHRLIKDGARLVETPEEVLDEVGRLGASAPATPPPRQAGPASPLLEAMGWEPVLAD
ALADAVGLTGAEVYAMLLELELDGQVASVAGGRFQRLAQN

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=384400 FYK34_RS18920 WP_149299220.1 3998271..3999353(-) (dprA) [Chromobacterium paludis strain IIBBL 257-1]
ATGAGCGACGCCGCGCGCGACTGGCTGCGGCTGGCGCTGACGCCCGGCATCGGCCCGGTGGGTTTCTTGAAGCTGATCGA
CGCCTTCGGCTCCGCCGGGTCCGCCGTGGCCGCCCGCGCCGCGCAGACCGAAAAGCTGGTGGGCCGCGAAGCCGCCGAAG
CGCTGCAGAACGGCGCGGCGGCCGAAGCCGTGGATGCCGCCCTGGCCTGGGCCGAGGGCGACGGCTGCCATCTGCTGACC
CTGCTCGACGACGACTACCCTCCGCAGCTGGCCGAAGCGGCCTCGCCGCCGCCGCTGTTGTTCGCGCGCGGCCGGCGCGA
GCTGTTGGCGCGCCCCATGCTGGCCGTGGTCGGCAGCCGCGCCGCCACGCCGCAGGGCAAGCGCAATGCCGAGGACTTCG
CCGCCGCCCTGGCCGCCCACGGCTACACCATCGTCAGCGGCCTGGCCAGCGGCATCGACGCCGCCGCCCATCAGGGCGCG
CTGGCGCACCCGGCCTCCACCGTCGCCGTCATCGGCACCGGCATCGACCGCGTCTACCCGGCGTCCAACCGTCAACTCGC
GCACCGCATCGCGGCCGAGGGCCTGATCCTGTCTGAATTTCCATTGGGTTTCGGCCCGCTCTCCGGCAATTTTCCGCGCC
GCAACCGCATCATCGCCGGCCTGGCGCGCGGCTGCCTGGTGGTGGAGGCCGGCACCGCCTCCGGCTCGCTGATCAGCGCG
CGGCTGGCGATGGAGAGCAACCGCGAAGTGATGGCGATACCGGGCAGCATTCACAACGCCCAGGCCCGCGGCTGCCACCG
GCTGATCAAAGACGGCGCGCGCCTGGTGGAAACGCCGGAGGAAGTGCTGGACGAGGTGGGCAGGCTGGGCGCCAGCGCCC
CGGCGACGCCCCCGCCGCGCCAAGCCGGGCCAGCCAGCCCATTGCTGGAGGCGATGGGCTGGGAACCGGTGCTGGCGGAC
GCCCTGGCCGACGCCGTCGGGTTGACTGGGGCAGAGGTTTACGCGATGCTGCTCGAACTGGAGCTGGACGGCCAGGTGGC
CAGCGTGGCCGGCGGCCGTTTCCAGCGCCTGGCACAAAACTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(293-352)

DNA recombination-mediator protein A (DNA_processg_A)

(72-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C1DNC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria meningitidis MC58

48.062

100

0.517
  dprA Neisseria meningitidis strain C311

48.062

100

0.517
  dprA Neisseria gonorrhoeae strain FA1090

48.052

100

0.514
  dprA Neisseria gonorrhoeae MS11

47.532

100

0.508
  dprA Vibrio campbellii strain DS40M4

41.457

99.167

0.411
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.227

100

0.394
  dprA Thermus thermophilus HB27

39.886

97.5

0.389
  dprA Acinetobacter baylyi ADP1

38.202

98.889

0.378
  dprA Haemophilus influenzae Rd KW20

37.892

97.5

0.369
  dprA Legionella pneumophila strain ERS1305867

44.932

82.222

0.369
  dprA Glaesserella parasuis strain SC1401

42.581

86.111

0.367

Multiple sequence alignment