Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FYN22_RS14645 Genome accession   NZ_CP043307
Coordinates   3018070..3019296 (+) Length   408 a.a.
NCBI ID   WP_010325767.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain Acsw19     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3013070..3024296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYN22_RS14600 (FYN22_14600) rimP 3013436..3013960 (-) 525 WP_148826860.1 ribosome maturation factor RimP -
  FYN22_RS14630 (FYN22_14630) secG 3014913..3015242 (-) 330 WP_004692710.1 preprotein translocase subunit SecG -
  FYN22_RS14635 (FYN22_14635) tpiA 3015256..3016047 (-) 792 WP_010325769.1 triose-phosphate isomerase -
  FYN22_RS14640 (FYN22_14640) pilB 3016327..3018039 (+) 1713 WP_148826861.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FYN22_RS14645 (FYN22_14645) pilC 3018070..3019296 (+) 1227 WP_010325767.1 type II secretion system F family protein Machinery gene
  FYN22_RS14650 (FYN22_14650) pilD 3019296..3020156 (+) 861 WP_148826862.1 prepilin peptidase Machinery gene
  FYN22_RS14655 (FYN22_14655) coaE 3020163..3020762 (+) 600 WP_148826863.1 dephospho-CoA kinase -
  FYN22_RS14660 (FYN22_14660) - 3020776..3021693 (-) 918 WP_148826864.1 DMT family transporter -
  FYN22_RS14665 (FYN22_14665) rlmB 3021726..3022475 (-) 750 WP_004692717.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  FYN22_RS14670 (FYN22_14670) - 3022618..3022941 (-) 324 WP_004692718.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44814.23 Da        Isoelectric Point: 9.7992

>NTDB_id=382778 FYN22_RS14645 WP_010325767.1 3018070..3019296(+) (pilC) [Acinetobacter johnsonii strain Acsw19]
MAVKKAQMMPTFNYEGIDRKGAKIKGELPARNLALAKVTLRKQGITIKSIREKKKNILEGILKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAVYK
EKSELLKQKIKKAMKYPATVVVVAVIVTIILMVKVVPVFQELFSSFGADLPAFTQMVVNMSEWMQKYWFILIIVVGVVIT
ALLETKKRSKKFRDMLDKAALKAPIFGDLVYKAIIARYSRTLSTTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRATNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTAMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=382778 FYN22_RS14645 WP_010325767.1 3018070..3019296(+) (pilC) [Acinetobacter johnsonii strain Acsw19]
ATGGCTGTCAAAAAAGCACAGATGATGCCAACCTTCAATTATGAAGGGATTGATCGTAAAGGGGCAAAAATTAAAGGGGA
ATTGCCTGCACGTAACCTTGCCCTCGCCAAAGTTACTTTGCGCAAACAAGGGATTACCATCAAGAGTATTCGAGAAAAGA
AAAAGAATATTCTTGAAGGCATATTGAAGAAAAAAGTGACCACACTGGACATCACGATTTTCACCCGACAGCTCGCAACC
ATGATGAAAGCGGGTGTACCATTGGTACAAGGCTTTGAAATTGTGGCTGAAGGCTTGGAAAACCCGTCTATGCGTGAAGT
TGTCCTCGGCATTAAAGGTGAAGTTGAGGGTGGTAATACCTTTGCTGGAGCACTCAAAAAATATCCTCAATATTTCGACA
ACTTATTCTGTTCATTGGTTGAATCGGGTGAACAATCAGGTGCGCTTGAGACCATGCTGGATCGTGTGGCAGTCTATAAA
GAAAAAAGTGAGTTGTTAAAGCAAAAAATTAAAAAAGCCATGAAATACCCAGCAACCGTGGTTGTGGTTGCTGTGATCGT
GACTATTATTTTGATGGTCAAAGTTGTCCCTGTTTTCCAAGAACTCTTTAGTTCCTTTGGTGCAGACTTACCTGCATTCA
CCCAAATGGTGGTAAATATGTCTGAATGGATGCAGAAATACTGGTTCATTTTGATTATTGTCGTTGGTGTGGTGATTACC
GCTTTACTCGAAACCAAAAAGCGTAGTAAAAAGTTTCGTGACATGCTAGATAAAGCCGCCCTCAAAGCCCCAATTTTTGG
TGATTTAGTCTATAAAGCGATTATCGCGCGCTATAGCCGCACCCTATCGACAACCTTTGCTGCAGGTGTACCCTTAATTG
ATGCCCTCGAATCTACCGCGGGTGCAACCAACAATGTGGTCTATGAAGAAGCTGTGATGAAGATCCGTGAAGATGTCGCA
ACAGGGCAACAACTTCAATTCGCGATGCGTGCCACCAATAAATTTCCATCAATGGCAGTACAAATGGTAGCGATTGGTGA
AGAATCTGGTGCGCTCGATGCCATGTTGGATAAAGTTGCCACTCACTATGAAAACGAAGTCGATAATGCGGTGGATGGCT
TAACGGCAATGATGGAGCCTCTCATCATGGCAGTCTTGGGTGTACTTGTGGGTGGCCTAGTAATTGCCATGTATTTACCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.725

100

0.887
  pilC Acinetobacter baylyi ADP1

82.108

100

0.821
  pilC Pseudomonas stutzeri DSM 10701

61.481

99.265

0.61
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria gonorrhoeae MS11

46.985

97.549

0.458
  pilG Neisseria meningitidis 44/76-A

46.985

97.549

0.458
  pilC Vibrio cholerae strain A1552

43.137

100

0.431
  pilC Vibrio campbellii strain DS40M4

41.912

100

0.419
  pilC Thermus thermophilus HB27

37.157

98.284

0.365

Multiple sequence alignment