Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FQP84_RS00225 Genome accession   NZ_CP043302
Coordinates   28883..29311 (-) Length   142 a.a.
NCBI ID   WP_000934784.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 16445     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 10..41932 28883..29311 within 0


Gene organization within MGE regions


Location: 10..41932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQP84_RS00010 (FQP84_00010) - 10..1884 (-) 1875 WP_000524043.1 glucosaminidase domain-containing protein -
  FQP84_RS00015 (FQP84_00015) - 2021..2320 (-) 300 WP_149590246.1 DUF2951 domain-containing protein -
  FQP84_RS00020 (FQP84_00020) - 2361..2534 (-) 174 WP_001790193.1 XkdX family protein -
  FQP84_RS00025 (FQP84_00025) - 2538..2915 (-) 378 WP_000705909.1 DUF2977 domain-containing protein -
  FQP84_RS00030 (FQP84_00030) - 2915..4738 (-) 1824 WP_000634519.1 BppU family phage baseplate upper protein -
  FQP84_RS00035 (FQP84_00035) - 4738..6636 (-) 1899 WP_000323259.1 hypothetical protein -
  FQP84_RS00040 (FQP84_00040) - 6649..8532 (-) 1884 WP_001144706.1 SGNH/GDSL hydrolase family protein -
  FQP84_RS00045 (FQP84_00045) - 8543..9478 (-) 936 WP_000560196.1 phage tail domain-containing protein -
  FQP84_RS00050 (FQP84_00050) - 9493..12462 (-) 2970 WP_001606770.1 hypothetical protein -
  FQP84_RS00055 (FQP84_00055) - 12465..12806 (-) 342 WP_001580347.1 hypothetical protein -
  FQP84_RS00060 (FQP84_00060) - 12827..13321 (-) 495 WP_000141082.1 tail assembly chaperone -
  FQP84_RS00065 (FQP84_00065) - 13383..13943 (-) 561 WP_001606768.1 hypothetical protein -
  FQP84_RS00070 (FQP84_00070) - 13930..14367 (-) 438 WP_000270196.1 DUF3168 domain-containing protein -
  FQP84_RS00075 (FQP84_00075) - 14380..14793 (-) 414 WP_001151335.1 HK97-gp10 family putative phage morphogenesis protein -
  FQP84_RS00080 (FQP84_00080) - 14780..15115 (-) 336 WP_000482986.1 phage head closure protein -
  FQP84_RS00085 (FQP84_00085) - 15108..15422 (-) 315 WP_000338935.1 phage head-tail connector protein -
  FQP84_RS00090 (FQP84_00090) - 15422..15748 (-) 327 WP_000278799.1 Rho termination factor N-terminal domain-containing protein -
  FQP84_RS00095 (FQP84_00095) - 15765..16589 (-) 825 WP_001135558.1 N4-gp56 family major capsid protein -
  FQP84_RS00100 (FQP84_00100) - 16610..17206 (-) 597 WP_000366932.1 phage scaffolding protein -
  FQP84_RS00105 (FQP84_00105) - 17304..18284 (-) 981 WP_001795666.1 phage head morphogenesis protein -
  FQP84_RS00110 (FQP84_00110) - 18223..19701 (-) 1479 WP_001159668.1 phage portal protein -
  FQP84_RS00115 (FQP84_00115) - 19655..20863 (-) 1209 WP_001606760.1 PBSX family phage terminase large subunit -
  FQP84_RS15605 (FQP84_00120) - 20856..21350 (-) 495 WP_000594082.1 terminase small subunit -
  FQP84_RS00125 (FQP84_00125) - 21678..22100 (-) 423 WP_000162702.1 RinA family phage transcriptional activator -
  FQP84_RS00130 (FQP84_00130) - 22124..22270 (-) 147 WP_000990005.1 hypothetical protein -
  FQP84_RS15695 rinB 22382..22486 (-) 105 Protein_26 transcriptional activator RinB -
  FQP84_RS00140 (FQP84_00140) - 22479..22682 (-) 204 WP_001072794.1 hypothetical protein -
  FQP84_RS00145 (FQP84_00145) - 22679..22885 (-) 207 WP_000195769.1 DUF1381 domain-containing protein -
  FQP84_RS00150 (FQP84_00150) - 22882..23127 (-) 246 WP_000120374.1 hypothetical protein -
  FQP84_RS00155 (FQP84_00155) - 23164..23697 (-) 534 WP_000185642.1 dUTP diphosphatase -
  FQP84_RS00160 (FQP84_00160) - 23690..23938 (-) 249 WP_001065070.1 DUF1024 family protein -
  FQP84_RS00165 (FQP84_00165) - 23931..24239 (-) 309 WP_000144703.1 hypothetical protein -
  FQP84_RS00170 (FQP84_00170) - 24236..24583 (-) 348 WP_000979209.1 YopX family protein -
  FQP84_RS00175 (FQP84_00175) - 24580..24984 (-) 405 WP_000695764.1 hypothetical protein -
  FQP84_RS00180 (FQP84_00180) - 24997..25245 (-) 249 WP_001126831.1 phi PVL orf 51-like protein -
  FQP84_RS00185 (FQP84_00185) - 25246..25617 (-) 372 WP_000241093.1 SA1788 family PVL leukocidin-associated protein -
  FQP84_RS00190 (FQP84_00190) - 25618..25803 (-) 186 WP_001187266.1 DUF3113 family protein -
  FQP84_RS00195 (FQP84_00195) - 25808..26212 (-) 405 WP_000049789.1 DUF1064 domain-containing protein -
  FQP84_RS00200 (FQP84_00200) - 26223..26444 (-) 222 WP_001123692.1 DUF3269 family protein -
  FQP84_RS00205 (FQP84_00205) - 26457..26615 (-) 159 WP_000256594.1 hypothetical protein -
  FQP84_RS00210 (FQP84_00210) - 26609..27388 (-) 780 WP_149590247.1 ATP-binding protein -
  FQP84_RS00215 (FQP84_00215) - 27399..28202 (-) 804 WP_000504988.1 phage replisome organizer N-terminal domain-containing protein -
  FQP84_RS00220 (FQP84_00220) - 28174..28869 (-) 696 WP_054105103.1 putative HNHc nuclease -
  FQP84_RS00225 (FQP84_00225) ssbA 28883..29311 (-) 429 WP_000934784.1 single-stranded DNA-binding protein Machinery gene
  FQP84_RS00230 (FQP84_00230) - 29311..29934 (-) 624 WP_000139720.1 DUF1071 domain-containing protein -
  FQP84_RS00235 (FQP84_00235) - 29927..30148 (-) 222 WP_000815403.1 DUF2483 family protein -
  FQP84_RS00240 (FQP84_00240) - 30158..30418 (-) 261 WP_000291089.1 DUF1108 family protein -
  FQP84_RS00245 (FQP84_00245) - 30510..30671 (-) 162 WP_000066021.1 DUF1270 family protein -
  FQP84_RS00250 (FQP84_00250) - 30851..31081 (+) 231 WP_000395455.1 hypothetical protein -
  FQP84_RS00255 (FQP84_00255) - 31257..31997 (-) 741 WP_001606750.1 phage antirepressor KilAC domain-containing protein -
  FQP84_RS00260 (FQP84_00260) - 31999..32184 (-) 186 WP_000933364.1 helix-turn-helix domain-containing protein -
  FQP84_RS15610 - 32626..32796 (+) 171 WP_001280594.1 hypothetical protein -
  FQP84_RS15615 - 32757..32918 (-) 162 WP_001153176.1 hypothetical protein -
  FQP84_RS00265 (FQP84_00265) - 32952..33398 (-) 447 WP_000435350.1 hypothetical protein -
  FQP84_RS00270 (FQP84_00270) - 33411..33659 (-) 249 WP_000272858.1 helix-turn-helix domain-containing protein -
  FQP84_RS00275 (FQP84_00275) - 33823..34146 (+) 324 WP_001260487.1 helix-turn-helix domain-containing protein -
  FQP84_RS00280 (FQP84_00280) - 34159..34620 (+) 462 WP_000525009.1 hypothetical protein -
  FQP84_RS00285 (FQP84_00285) - 34638..35141 (+) 504 WP_000825944.1 hypothetical protein -
  FQP84_RS00290 (FQP84_00290) - 35385..36770 (+) 1386 WP_000861313.1 recombinase family protein -
  FQP84_RS00295 (FQP84_00295) rpmF 36887..37060 (-) 174 WP_000290472.1 50S ribosomal protein L32 -
  FQP84_RS00305 (FQP84_00305) - 37140..37697 (-) 558 WP_000872158.1 DUF177 domain-containing protein -
  FQP84_RS00310 (FQP84_00310) - 37824..38963 (+) 1140 WP_000843611.1 nucleotidyltransferase -
  FQP84_RS00315 (FQP84_00315) coaD 39025..39507 (-) 483 WP_000401377.1 pantetheine-phosphate adenylyltransferase -
  FQP84_RS00320 (FQP84_00320) rsmD 39509..40051 (-) 543 WP_001263796.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  FQP84_RS00325 (FQP84_00325) - 40121..40510 (+) 390 WP_000814565.1 hypothetical protein -
  FQP84_RS00330 (FQP84_00330) - 40513..40767 (-) 255 WP_001049149.1 YlbG family protein -
  FQP84_RS00335 (FQP84_00335) - 41006..41932 (+) 927 WP_000757569.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16035.56 Da        Isoelectric Point: 5.8724

>NTDB_id=382701 FQP84_RS00225 WP_000934784.1 28883..29311(-) (ssbA) [Staphylococcus aureus strain 16445]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=382701 FQP84_RS00225 WP_000934784.1 28883..29311(-) (ssbA) [Staphylococcus aureus strain 16445]
ATGTTAAATAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTATTTGTCACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.721

100

0.711
  ssb Latilactobacillus sakei subsp. sakei 23K

51.176

100

0.613
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

74.648

0.437
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.657

100

0.43
  ssbA Streptococcus mutans UA159

41.549

100

0.415
  ssbB/cilA Streptococcus mitis NCTC 12261

40.845

100

0.408
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.845

100

0.408
  ssbB/cilA Streptococcus pneumoniae Rx1

40.141

100

0.401
  ssbB/cilA Streptococcus pneumoniae D39

40.141

100

0.401
  ssbB/cilA Streptococcus pneumoniae R6

40.141

100

0.401
  ssbB/cilA Streptococcus mitis SK321

40.141

100

0.401

Multiple sequence alignment