Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   FR761_RS17755 Genome accession   NZ_CP042556
Coordinates   3636806..3637243 (-) Length   145 a.a.
NCBI ID   WP_151532459.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain E47     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3631806..3642243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR761_RS17730 (FR761_17730) - 3632164..3632547 (+) 384 WP_000090000.1 RidA family protein -
  FR761_RS17735 (FR761_17735) - 3632757..3632951 (+) 195 WP_000289091.1 bacterioferritin-associated ferredoxin -
  FR761_RS17740 (FR761_17740) bfr 3633196..3633660 (+) 465 WP_000678123.1 bacterioferritin -
  FR761_RS17745 (FR761_17745) - 3633701..3635329 (-) 1629 WP_057069677.1 PglL family O-oligosaccharyltransferase -
  FR761_RS17750 (FR761_17750) - 3635443..3636753 (-) 1311 WP_151532458.1 O-antigen ligase family protein -
  FR761_RS17755 (FR761_17755) comP 3636806..3637243 (-) 438 WP_151532459.1 pilin Machinery gene
  FR761_RS17760 (FR761_17760) - 3637585..3638145 (-) 561 WP_000258955.1 TPM domain-containing protein -
  FR761_RS17765 (FR761_17765) - 3638139..3639221 (-) 1083 WP_057069715.1 TPM domain-containing protein -
  FR761_RS17770 (FR761_17770) - 3639243..3639833 (-) 591 WP_000846931.1 LemA family protein -
  FR761_RS17775 (FR761_17775) - 3639964..3640851 (-) 888 WP_057069718.1 metal-dependent hydrolase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15250.44 Da        Isoelectric Point: 7.7725

>NTDB_id=378437 FR761_RS17755 WP_151532459.1 3636806..3637243(-) (comP) [Acinetobacter baumannii strain E47]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQDYIVRSKVTEGLNLASSYKTTIAENAGNGSADLTVGVPNFSKTENVDSI
KADKSSGAIAIKYTDKAKSLTLTLTPQDDGKPLSAGTVPTNQITWVCTVDKPDNAKYVPANCRGS

Nucleotide


Download         Length: 438 bp        

>NTDB_id=378437 FR761_RS17755 WP_151532459.1 3636806..3637243(-) (comP) [Acinetobacter baumannii strain E47]
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTCATGATCGTGGTTGCCATTATTGGTATTTTGGCAGCGATTGCGAT
CCCTGCGTATCAGGATTATATTGTTCGCTCAAAAGTAACAGAAGGTCTTAATTTGGCTTCATCATATAAAACGACTATTG
CTGAGAACGCAGGTAACGGTTCGGCGGATCTTACAGTAGGAGTTCCTAATTTTTCTAAGACAGAAAATGTTGATTCAATT
AAAGCGGATAAAAGTAGTGGAGCTATTGCAATTAAATATACTGATAAGGCTAAAAGTTTAACTTTGACATTAACCCCTCA
AGATGACGGAAAACCTTTGTCAGCTGGTACAGTGCCAACTAATCAGATTACTTGGGTGTGTACGGTAGATAAACCAGATA
ATGCTAAATATGTGCCAGCTAATTGTCGTGGCTCATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

48.125

100

0.531
  pilA Ralstonia pseudosolanacearum GMI1000

46.497

100

0.503
  pilA2 Legionella pneumophila strain ERS1305867

49.315

100

0.497
  pilA2 Legionella pneumophila str. Paris

49.315

100

0.497
  pilA Pseudomonas aeruginosa PAK

41.06

100

0.428
  pilA Acinetobacter baumannii strain A118

42.958

97.931

0.421
  pilA/pilAI Pseudomonas stutzeri DSM 10701

38.71

100

0.414
  pilA/pilA1 Eikenella corrodens VA1

37.179

100

0.4
  pilE Neisseria gonorrhoeae strain FA1090

34.337

100

0.393
  pilA Haemophilus influenzae 86-028NP

35.526

100

0.372

Multiple sequence alignment