Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FR741_RS03120 Genome accession   NZ_CP042451
Coordinates   630616..631839 (-) Length   407 a.a.
NCBI ID   WP_017635918.1    Uniprot ID   A0AAW9BMM9
Organism   Vibrio diabolicus strain FA3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 625616..636839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR741_RS03085 (FR741_03230) rimM 625742..626290 (+) 549 WP_005379964.1 ribosome maturation factor RimM -
  FR741_RS03090 (FR741_03235) trmD 626318..627061 (+) 744 WP_005425529.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  FR741_RS03095 (FR741_03240) rplS 627103..627456 (+) 354 WP_005379971.1 50S ribosomal protein L19 -
  FR741_RS03100 (FR741_03245) yacG 627946..628140 (-) 195 WP_005396692.1 DNA gyrase inhibitor YacG -
  FR741_RS03105 (FR741_03250) zapD 628299..629039 (-) 741 WP_012841416.1 cell division protein ZapD -
  FR741_RS03110 (FR741_03255) coaE 629067..629681 (-) 615 WP_047008979.1 dephospho-CoA kinase -
  FR741_RS03115 (FR741_03260) pilD 629682..630551 (-) 870 WP_012841418.1 A24 family peptidase Machinery gene
  FR741_RS03120 (FR741_03265) pilC 630616..631839 (-) 1224 WP_017635918.1 type II secretion system F family protein Machinery gene
  FR741_RS03125 (FR741_03270) pilB 631863..633548 (-) 1686 WP_167426248.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FR741_RS03130 (FR741_03275) pilA 633548..634027 (-) 480 WP_167426249.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  FR741_RS03135 (FR741_03285) nadC 634292..635179 (-) 888 WP_167426250.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FR741_RS03140 (FR741_03290) ampD 635272..635823 (+) 552 WP_046875077.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45313.50 Da        Isoelectric Point: 10.3992

>NTDB_id=377991 FR741_RS03120 WP_017635918.1 630616..631839(-) (pilC) [Vibrio diabolicus strain FA3]
MKSTTPQLKNFRWKGINSSGKKTSGQTLAMTEIEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGRDITVFTRQISTML
ITGVPLVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASEHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVVLVALGVSFIMLTKVIPEFEKMFVGFGADLPWFTRQVLDLSAWTQNWSPFIALGSISLFISA
RILSKRSDSFRLMLNRSVLKFPVLGPVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNLHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=377991 FR741_RS03120 WP_017635918.1 630616..631839(-) (pilC) [Vibrio diabolicus strain FA3]
ATGAAAAGCACTACACCACAACTTAAAAACTTCCGCTGGAAAGGCATCAACAGTTCAGGCAAAAAGACGTCTGGACAAAC
CCTCGCGATGACAGAAATTGAAGTACGCGAGCGTCTAGACGCACAGCACATCAAGATCAAGAAGTTAAAGAAAAGCAGTA
TCTCGTTTCTCACTAAACTCAGCCATCGCGTAAAAGGCAGAGACATCACGGTGTTTACCCGTCAAATTTCGACGATGTTG
ATAACCGGTGTACCCTTAGTTCAGGCTTTAAAATTGGTCTCAGAAAACCATAAAAAAGCAGAGATGAAATCCATTTTGAT
GAGCGTGACACGCGCCGTTGAGGCAGGTACACCCATGTCAAAAGCCATGCGCACTGCAAGTGAACACTTTGACCCACTCT
ATACCGACCTTATCGCAACAGGTGAGCAATCCGGTAACTTAGCGGAAGTGTTCGAGCGCTTAGCCACCTACCGAGAAAAA
AATGAGCAGCTTCGTGCGAAAGTGATAAAAGCACTGATTTACCCAGCCATGGTAGTGCTAGTAGCGTTAGGCGTGTCGTT
TATCATGCTCACCAAAGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGTTTTGGTGCTGACTTACCGTGGTTTACCAGGC
AAGTGTTAGATCTTTCCGCCTGGACACAAAACTGGAGCCCATTTATAGCACTAGGCTCTATCAGTCTATTCATCTCGGCG
AGAATCCTCTCTAAGCGTTCAGATTCTTTTCGCTTAATGCTCAATCGCTCTGTGCTTAAATTTCCTGTTCTTGGCCCTGT
ATTATCAAAAGCCGCTATCGCCAAATTTAGTCGAACACTCGCCACAAGCTTTACAGCGGGCATTCCAATTCTAACCAGTT
TAAAAACCACATCAAAAACATCAGGAAACTTGCACTATCAACTCGCCATAGAAGAAGTCTACCGTGATACCGCCGCAGGT
ATGCCAATGTATGTTGCCATGCGTAACTGTAATGTGTTCCCTGAATTAGTGTTACAAATGGTCATGATCGGTGAAGAGTC
TGGTCGACTTGACGATATGCTCAATAAAGTTGCAACGATCTACGAGTTTGAAGTCGATAACACCGTCGACAACCTTAGTA
AAATTCTAGAGCCGCTAATTATCGTTTTTTTAGGCATCGTTGTTGGCGGATTAGTGACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

87.224

100

0.872
  pilC Vibrio cholerae strain A1552

73.775

100

0.74
  pilC Acinetobacter baylyi ADP1

43

98.28

0.423
  pilC Acinetobacter baumannii D1279779

41.439

99.017

0.41
  pilG Neisseria gonorrhoeae MS11

40.494

99.509

0.403
  pilC Legionella pneumophila strain ERS1305867

40.295

100

0.403
  pilG Neisseria meningitidis 44/76-A

40.247

99.509

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398

Multiple sequence alignment