Detailed information    

insolico Bioinformatically predicted

Overview


Name   xerS   Type   Machinery gene
Locus tag   HB750_RS04620 Genome accession   NZ_CP050273
Coordinates   910886..911956 (+) Length   356 a.a.
NCBI ID   WP_019804773.1    Uniprot ID   -
Organism   Streptococcus mutans strain P1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 905886..916956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB750_RS04595 (HB750_04595) - 906404..907237 (+) 834 WP_019804774.1 glycosyltransferase family 8 protein -
  HB750_RS04600 (HB750_04600) - 907375..908067 (+) 693 WP_002271550.1 response regulator transcription factor -
  HB750_RS04605 (HB750_04605) - 908067..908945 (+) 879 WP_002273941.1 sensor histidine kinase -
  HB750_RS04610 (HB750_04610) - 908993..909736 (-) 744 WP_002273333.1 ABC transporter permease -
  HB750_RS04615 (HB750_04615) - 909757..910665 (-) 909 WP_002266016.1 ABC transporter ATP-binding protein -
  HB750_RS04620 (HB750_04620) xerS 910886..911956 (+) 1071 WP_019804773.1 tyrosine recombinase XerS Machinery gene
  HB750_RS04625 (HB750_04625) - 912298..912579 (+) 282 WP_002281440.1 Blp family class II bacteriocin -
  HB750_RS10495 (HB750_04630) - 913266..913377 (+) 112 Protein_900 IS3 family transposase -
  HB750_RS04635 (HB750_04635) - 913445..914836 (-) 1392 WP_019804772.1 oxaloacetate decarboxylase subunit alpha -
  HB750_RS04640 (HB750_04640) citX 914849..915385 (-) 537 WP_002266561.1 citrate lyase holo-[acyl-carrier protein] synthase -
  HB750_RS04645 (HB750_04645) citF 915378..916913 (-) 1536 WP_019804771.1 citrate lyase subunit alpha -

Sequence


Protein


Download         Length: 356 a.a.        Molecular weight: 41592.88 Da        Isoelectric Point: 9.6657

>NTDB_id=377993 HB750_RS04620 WP_019804773.1 910886..911956(+) (xerS) [Streptococcus mutans strain P1]
MRRELLLEKIDELKELMPWYVLEYYQSKLTVPYSFTTLYEYLKEYRRFFEWLINSGVSDANKLADIPLETLEHLSKKDME
SFIIYLRERTLLNTKNKRQGVSQTTINRTLSALSSLYKYLTEEVENADGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGNETMEFLEYVDCEYEHKLSKRALSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVTRKGGKHDS
VNVAGFAKPYLENYITIRRGRYKAEKTDLAFFLSEYRGVPNRMDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=377993 HB750_RS04620 WP_019804773.1 910886..911956(+) (xerS) [Streptococcus mutans strain P1]
ATGAGACGTGAACTCTTACTTGAAAAAATTGACGAACTTAAGGAACTTATGCCTTGGTATGTGCTAGAGTATTATCAATC
TAAATTGACAGTTCCTTATAGTTTTACGACCTTATACGAATATTTAAAAGAATATCGGCGTTTCTTTGAATGGTTAATCA
ATTCTGGCGTTTCTGATGCGAATAAACTTGCCGATATTCCGCTGGAAACTTTGGAGCATCTTAGTAAAAAAGATATGGAA
TCCTTTATTATTTATTTACGAGAACGAACTCTTTTAAACACTAAAAACAAACGTCAAGGTGTTTCTCAGACAACGATAAA
CCGCACACTTTCAGCCTTATCAAGCCTTTATAAATACTTGACTGAGGAAGTTGAAAATGCTGATGGTGAACCTTATTTTT
ATCGAAATGTCATGAAAAAGGTATCAACTAAAAAGAAAAAGGAAACATTGGCCGCACGAGCTGAGAATATTAAACAAAAG
CTCTTTTTAGGCAATGAAACAATGGAATTTTTAGAATATGTGGATTGTGAATATGAACACAAACTTTCTAAACGCGCTCT
TTCCTCTTTTCGAAAAAATAAAGAAAGAGATTTGGCAATTATTGCTTTGCTGCTAGCATCTGGAGTTCGTCTTTCAGAGG
CTGTTAACCTTGATCTTAAGGATGTTAATCTCAATATGATGATTATTGAAGTTACCCGTAAGGGCGGCAAACACGATTCG
GTTAATGTCGCTGGTTTCGCTAAACCTTATTTAGAAAACTACATTACTATCAGACGGGGGCGCTATAAGGCTGAAAAGAC
TGATCTAGCTTTCTTTTTATCCGAATATCGTGGTGTTCCTAATCGCATGGATGCTTCTTCTATTGAAAAAATGGTTGCTA
AATATTCGCAAGATTTCAAAATCCGCGTCACTCCCCACAAACTAAGACACACGCTTGCAACTAGATTATACGATGCTACC
AAATCACAAGTTTTGGTCAGTCATCAATTAGGTCATGCTTCTACTCAAGTAACAGACCTTTATACTCATATCGTTAATGA
TGAACAAAAAAATGCTTTAGATAAATTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

82.584

100

0.826


Multiple sequence alignment