Detailed information NTG0377990

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FR741_RS03115
• Genome accession: NZ_CP042451
• Coordinates: 629682..630551 (-)
• Length: 289 a.a.
• NCBI ID: WP_012841418.1
• Uniprot ID: -
• Organism: Vibrio diabolicus strain FA3
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 624682..635551

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FR741_RS03080 (FR741_03225)	rpsP	625464..625712 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
FR741_RS03085 (FR741_03230)	rimM	625742..626290 (+)	549	WP_005379964.1	ribosome maturation factor RimM	-
FR741_RS03090 (FR741_03235)	trmD	626318..627061 (+)	744	WP_005425529.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
FR741_RS03095 (FR741_03240)	rplS	627103..627456 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
FR741_RS03100 (FR741_03245)	yacG	627946..628140 (-)	195	WP_005396692.1	DNA gyrase inhibitor YacG	-
FR741_RS03105 (FR741_03250)	zapD	628299..629039 (-)	741	WP_012841416.1	cell division protein ZapD	-
FR741_RS03110 (FR741_03255)	coaE	629067..629681 (-)	615	WP_047008979.1	dephospho-CoA kinase	-
FR741_RS03115 (FR741_03260)	pilD	629682..630551 (-)	870	WP_012841418.1	A24 family peptidase	Machinery gene
FR741_RS03120 (FR741_03265)	pilC	630616..631839 (-)	1224	WP_017635918.1	type II secretion system F family protein	Machinery gene
FR741_RS03125 (FR741_03270)	pilB	631863..633548 (-)	1686	WP_167426248.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FR741_RS03130 (FR741_03275)	pilA	633548..634027 (-)	480	WP_167426249.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
FR741_RS03135 (FR741_03285)	nadC	634292..635179 (-)	888	WP_167426250.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32523.70 Da
• Isoelectric Point: 7.0195

>NTDB_id=377990 FR741_RS03115 WP_012841418.1 629682..630551(-) (pilD) [Vibrio diabolicus strain FA3]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQTAISARYPLIELLTAFCSGFVAYHFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=377990 FR741_RS03115 WP_012841418.1 629682..630551(-) (pilD) [Vibrio diabolicus strain FA3]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTTATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGTCAGAAGTGCGCAACGCCGATACGTATTCGA
GACAACATCCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGCCACAACTGTCAGACAGCCATTAGCGCACGCTATCC
ACTGATTGAACTGCTCACTGCGTTCTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACTGTTGCCCTAC
TCTTTTTCACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGTTACTTACCGGTAAAGAAGGAATGGGATATGGTGATTTTA
AACTACTCGCAGCACTAGGGGCTTGGCTGGGCTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAACAGGGAATTGAAAAAGCTTTTCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGACCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	91.003	100	0.91
pilD	Vibrio cholerae strain A1552	72.917	99.654	0.727
pilD	Acinetobacter baumannii D1279779	52.593	93.426	0.491
pilD	Acinetobacter nosocomialis M2	52.222	93.426	0.488
pilD	Neisseria gonorrhoeae MS11	48.551	95.502	0.464