Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FR729_RS10805 Genome accession   NZ_CP042449
Coordinates   2322855..2324078 (+) Length   407 a.a.
NCBI ID   WP_167415439.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain FA2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2317855..2329078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FR729_RS10785 (FR729_11120) ampD 2318895..2319446 (-) 552 WP_167415436.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  FR729_RS10790 (FR729_11125) nadC 2319539..2320426 (+) 888 WP_017820396.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FR729_RS10795 (FR729_11130) pilA 2320688..2321146 (+) 459 WP_167415437.1 pilin Machinery gene
  FR729_RS10800 (FR729_11135) pilB 2321146..2322831 (+) 1686 WP_167415438.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FR729_RS10805 (FR729_11140) pilC 2322855..2324078 (+) 1224 WP_167415439.1 type II secretion system F family protein Machinery gene
  FR729_RS10810 (FR729_11145) pilD 2324143..2325012 (+) 870 WP_025768182.1 prepilin peptidase Machinery gene
  FR729_RS10815 (FR729_11150) coaE 2325013..2325627 (+) 615 WP_017635920.1 dephospho-CoA kinase -
  FR729_RS10820 (FR729_11155) zapD 2325655..2326395 (+) 741 WP_005373086.1 cell division protein ZapD -
  FR729_RS10825 (FR729_11160) yacG 2326554..2326748 (+) 195 WP_017635922.1 DNA gyrase inhibitor YacG -
  FR729_RS10830 (FR729_11165) rplS 2327232..2327585 (-) 354 WP_005379971.1 50S ribosomal protein L19 -
  FR729_RS10835 (FR729_11170) trmD 2327627..2328388 (-) 762 WP_005385420.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  FR729_RS10840 (FR729_11175) rimM 2328416..2328964 (-) 549 WP_005379964.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45325.51 Da        Isoelectric Point: 10.4523

>NTDB_id=377939 FR729_RS10805 WP_167415439.1 2322855..2324078(+) (pilC) [Vibrio alginolyticus strain FA2]
MKSTTPQLKNFRWKGINSSGKKTSGQTLAMTEIEVRERLNAQHIKIKKLKKSSISFLTKLSHRVKGRDITVFTRQISTML
ITGVPLVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASEHFDPLYNDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVVLVALGVSFIMLTKVIPEFEKMFVGFGADLPWFTRQVLDLSAWTQNWSPFIALGSISLFISA
RIISKRSDSFRLMLNRSVLKFPVLGPVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNLHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=377939 FR729_RS10805 WP_167415439.1 2322855..2324078(+) (pilC) [Vibrio alginolyticus strain FA2]
ATGAAAAGCACTACACCACAACTTAAAAACTTCCGCTGGAAAGGCATCAACAGTTCAGGCAAAAAGACGTCTGGACAAAC
CCTCGCGATGACAGAAATTGAAGTACGCGAACGTCTAAACGCACAACACATCAAGATCAAGAAGTTAAAGAAAAGCAGTA
TCTCGTTTCTAACTAAACTCAGCCATCGCGTGAAAGGCAGAGACATCACGGTGTTTACCCGGCAAATTTCGACGATGTTG
ATAACCGGTGTCCCCTTAGTTCAGGCTTTAAAATTGGTATCAGAAAACCACAAAAAAGCAGAGATGAAATCCATTTTGAT
GAGCGTGACACGCGCCGTTGAAGCGGGTACGCCCATGTCAAAAGCAATGCGCACTGCAAGTGAACACTTTGACCCACTCT
ATAACGACCTTATCGCCACAGGTGAGCAATCCGGTAACTTAGCAGAAGTATTCGAGCGCTTAGCCACCTACCGAGAAAAA
AATGAACAACTCCGTGCGAAAGTGATCAAAGCCCTGATTTACCCAGCAATGGTAGTGCTAGTAGCGTTAGGCGTCTCGTT
TATCATGCTCACCAAAGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGTTTTGGTGCTGACTTACCTTGGTTTACCAGGC
AAGTATTAGATCTTTCCGCCTGGACACAAAACTGGAGTCCGTTTATCGCACTAGGCTCCATTAGTTTATTCATCTCGGCG
AGAATCATCTCTAAGCGTTCAGATTCTTTTCGCTTAATGCTCAACCGCTCTGTGCTTAAATTTCCTGTTCTGGGCCCTGT
ATTATCAAAAGCCGCTATCGCCAAATTTAGTCGAACACTCGCCACAAGCTTTACAGCGGGTATTCCAATTCTAACCAGTT
TAAAAACCACATCAAAAACCTCAGGAAACTTACACTATCAACTCGCCATAGAAGAAGTTTACCGTGATACCGCCGCAGGT
ATGCCAATGTATGTTGCCATGCGTAACTGTAATGTGTTCCCTGAATTAGTGTTACAAATGGTCATGATCGGTGAAGAGTC
TGGTCGACTTGACGATATGCTCAATAAAGTTGCAACGATCTACGAGTTTGAAGTCGACAACACCGTCGACAACCTTAGTA
AAATTCTAGAGCCGCTAATTATCGTATTTTTAGGTATCGTTGTTGGCGGATTAGTGACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

86.732

100

0.867
  pilC Vibrio cholerae strain A1552

73.529

100

0.737
  pilC Acinetobacter baylyi ADP1

42.75

98.28

0.42
  pilC Acinetobacter baumannii D1279779

41.439

99.017

0.41
  pilC Legionella pneumophila strain ERS1305867

40.295

100

0.403
  pilG Neisseria gonorrhoeae MS11

40.247

99.509

0.4
  pilG Neisseria meningitidis 44/76-A

40

99.509

0.398
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398

Multiple sequence alignment