Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | FR729_RS10795 | Genome accession | NZ_CP042449 |
| Coordinates | 2320688..2321146 (+) | Length | 152 a.a. |
| NCBI ID | WP_167415437.1 | Uniprot ID | - |
| Organism | Vibrio alginolyticus strain FA2 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2315688..2326146
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FR729_RS10780 (FR729_11115) | pdhR | 2317722..2318489 (-) | 768 | WP_005379989.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| FR729_RS10785 (FR729_11120) | ampD | 2318895..2319446 (-) | 552 | WP_167415436.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| FR729_RS10790 (FR729_11125) | nadC | 2319539..2320426 (+) | 888 | WP_017820396.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| FR729_RS10795 (FR729_11130) | pilA | 2320688..2321146 (+) | 459 | WP_167415437.1 | pilin | Machinery gene |
| FR729_RS10800 (FR729_11135) | pilB | 2321146..2322831 (+) | 1686 | WP_167415438.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| FR729_RS10805 (FR729_11140) | pilC | 2322855..2324078 (+) | 1224 | WP_167415439.1 | type II secretion system F family protein | Machinery gene |
| FR729_RS10810 (FR729_11145) | pilD | 2324143..2325012 (+) | 870 | WP_025768182.1 | prepilin peptidase | Machinery gene |
| FR729_RS10815 (FR729_11150) | coaE | 2325013..2325627 (+) | 615 | WP_017635920.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 16241.66 Da Isoelectric Point: 8.1016
>NTDB_id=377937 FR729_RS10795 WP_167415437.1 2320688..2321146(+) (pilA) [Vibrio alginolyticus strain FA2]
MKNSKQKKQQGFTLIELMIVVAIIGILAAFAVPAYQDYTKKATLSEFPKAAAAVKMAVELCAHENASDQTSFSKNCISDK
NGIPKVVNLNNIKITAEAASAGVKVIAEASTDKGPIEAKEKYVMTAAYSGDGLTWTNTCLDSADKNQTTYCP
MKNSKQKKQQGFTLIELMIVVAIIGILAAFAVPAYQDYTKKATLSEFPKAAAAVKMAVELCAHENASDQTSFSKNCISDK
NGIPKVVNLNNIKITAEAASAGVKVIAEASTDKGPIEAKEKYVMTAAYSGDGLTWTNTCLDSADKNQTTYCP
Nucleotide
Download Length: 459 bp
>NTDB_id=377937 FR729_RS10795 WP_167415437.1 2320688..2321146(+) (pilA) [Vibrio alginolyticus strain FA2]
ATGAAAAACAGTAAACAAAAAAAACAACAGGGTTTTACTCTGATTGAATTAATGATTGTGGTGGCGATTATTGGGATTTT
GGCGGCGTTTGCTGTGCCTGCTTATCAAGACTACACCAAGAAAGCGACTTTATCAGAATTTCCTAAGGCCGCAGCTGCTG
TAAAAATGGCAGTAGAACTTTGTGCACATGAGAATGCTTCAGATCAAACATCTTTTTCCAAAAATTGTATATCTGACAAA
AATGGAATTCCCAAAGTAGTGAACCTTAATAATATCAAGATAACTGCAGAAGCAGCATCTGCAGGTGTAAAAGTAATAGC
AGAAGCTTCGACAGACAAAGGGCCAATTGAGGCAAAAGAAAAATATGTGATGACAGCAGCATACTCTGGCGACGGACTAA
CATGGACGAATACTTGTTTAGATTCAGCTGACAAAAATCAAACTACATATTGTCCATAA
ATGAAAAACAGTAAACAAAAAAAACAACAGGGTTTTACTCTGATTGAATTAATGATTGTGGTGGCGATTATTGGGATTTT
GGCGGCGTTTGCTGTGCCTGCTTATCAAGACTACACCAAGAAAGCGACTTTATCAGAATTTCCTAAGGCCGCAGCTGCTG
TAAAAATGGCAGTAGAACTTTGTGCACATGAGAATGCTTCAGATCAAACATCTTTTTCCAAAAATTGTATATCTGACAAA
AATGGAATTCCCAAAGTAGTGAACCTTAATAATATCAAGATAACTGCAGAAGCAGCATCTGCAGGTGTAAAAGTAATAGC
AGAAGCTTCGACAGACAAAGGGCCAATTGAGGCAAAAGAAAAATATGTGATGACAGCAGCATACTCTGGCGACGGACTAA
CATGGACGAATACTTGTTTAGATTCAGCTGACAAAAATCAAACTACATATTGTCCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio campbellii strain DS40M4 |
59.091 |
100 |
0.599 |
| pilA | Haemophilus influenzae Rd KW20 |
43.382 |
89.474 |
0.388 |
| pilA | Haemophilus influenzae 86-028NP |
42.029 |
90.789 |
0.382 |