Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | FR729_RS10810 | Genome accession | NZ_CP042449 |
| Coordinates | 2324143..2325012 (+) | Length | 289 a.a. |
| NCBI ID | WP_025768182.1 | Uniprot ID | A0AA36UQF6 |
| Organism | Vibrio alginolyticus strain FA2 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2319143..2330012
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FR729_RS10790 (FR729_11125) | nadC | 2319539..2320426 (+) | 888 | WP_017820396.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| FR729_RS10795 (FR729_11130) | pilA | 2320688..2321146 (+) | 459 | WP_167415437.1 | pilin | Machinery gene |
| FR729_RS10800 (FR729_11135) | pilB | 2321146..2322831 (+) | 1686 | WP_167415438.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| FR729_RS10805 (FR729_11140) | pilC | 2322855..2324078 (+) | 1224 | WP_167415439.1 | type II secretion system F family protein | Machinery gene |
| FR729_RS10810 (FR729_11145) | pilD | 2324143..2325012 (+) | 870 | WP_025768182.1 | prepilin peptidase | Machinery gene |
| FR729_RS10815 (FR729_11150) | coaE | 2325013..2325627 (+) | 615 | WP_017635920.1 | dephospho-CoA kinase | - |
| FR729_RS10820 (FR729_11155) | zapD | 2325655..2326395 (+) | 741 | WP_005373086.1 | cell division protein ZapD | - |
| FR729_RS10825 (FR729_11160) | yacG | 2326554..2326748 (+) | 195 | WP_017635922.1 | DNA gyrase inhibitor YacG | - |
| FR729_RS10830 (FR729_11165) | rplS | 2327232..2327585 (-) | 354 | WP_005379971.1 | 50S ribosomal protein L19 | - |
| FR729_RS10835 (FR729_11170) | trmD | 2327627..2328388 (-) | 762 | WP_005385420.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| FR729_RS10840 (FR729_11175) | rimM | 2328416..2328964 (-) | 549 | WP_005379964.1 | ribosome maturation factor RimM | - |
| FR729_RS10845 (FR729_11180) | rpsP | 2328994..2329242 (-) | 249 | WP_005379962.1 | 30S ribosomal protein S16 | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32597.78 Da Isoelectric Point: 7.0197
>NTDB_id=377940 FR729_RS10810 WP_025768182.1 2324143..2325012(+) (pilD) [Vibrio alginolyticus strain FA2]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQTTISTRYPLIELLTAFCSGFVAYHFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGEQILNWYFTSVLGV
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQTTISTRYPLIELLTAFCSGFVAYHFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGEQILNWYFTSVLGV
Nucleotide
Download Length: 870 bp
>NTDB_id=377940 FR729_RS10810 WP_025768182.1 2324143..2325012(+) (pilD) [Vibrio alginolyticus strain FA2]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGCCAGAAATGCGCAACACCGATACGTATTCGC
GACAACATTCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGTCACAACTGTCAGACAACCATTAGCACACGCTATCC
ACTGATTGAACTGCTCACTGCATTCTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTCACTTTTATCTTAATCGCTGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGATATGGTGATTTTA
AACTACTAGCAGCACTAGGGGCTTGGCTAGGTTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAACAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGAGCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGCCAGAAATGCGCAACACCGATACGTATTCGC
GACAACATTCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGTCACAACTGTCAGACAACCATTAGCACACGCTATCC
ACTGATTGAACTGCTCACTGCATTCTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTCACTTTTATCTTAATCGCTGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGATATGGTGATTTTA
AACTACTAGCAGCACTAGGGGCTTGGCTAGGTTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAACAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGAGCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
90.657 |
100 |
0.907 |
| pilD | Vibrio cholerae strain A1552 |
72.222 |
99.654 |
0.72 |
| pilD | Acinetobacter baumannii D1279779 |
51.812 |
95.502 |
0.495 |
| pilD | Acinetobacter nosocomialis M2 |
51.282 |
94.464 |
0.484 |
| pilD | Neisseria gonorrhoeae MS11 |
48.188 |
95.502 |
0.46 |