Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FGL80_RS07780 Genome accession   NZ_CP042420
Coordinates   1564284..1564697 (-) Length   137 a.a.
NCBI ID   WP_029509777.1    Uniprot ID   A0AAP9JA52
Organism   Leuconostoc lactis strain CBA3622     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1541068..1575656 1564284..1564697 within 0


Gene organization within MGE regions


Location: 1541068..1575656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL80_RS07620 (FGL80_07620) - 1541068..1541685 (-) 618 WP_055307754.1 metallophosphoesterase family protein -
  FGL80_RS07625 (FGL80_07625) - 1541738..1542184 (-) 447 WP_055307753.1 hypothetical protein -
  FGL80_RS07630 (FGL80_07630) - 1542186..1543280 (-) 1095 WP_055307752.1 M24 family metallopeptidase -
  FGL80_RS07635 (FGL80_07635) rpmA 1543397..1543714 (-) 318 WP_010000600.1 50S ribosomal protein L27 -
  FGL80_RS07640 (FGL80_07640) rplU 1543743..1544042 (-) 300 WP_010000601.1 50S ribosomal protein L21 -
  FGL80_RS07645 (FGL80_07645) - 1544197..1544772 (-) 576 WP_055307751.1 TetR/AcrR family transcriptional regulator -
  FGL80_RS07650 (FGL80_07650) - 1544802..1545320 (-) 519 WP_010000604.1 hypothetical protein -
  FGL80_RS07660 (FGL80_07660) - 1546151..1546456 (+) 306 WP_048699725.1 transposase -
  FGL80_RS07665 (FGL80_07665) - 1546453..1547331 (+) 879 WP_055307687.1 IS3 family transposase -
  FGL80_RS07670 (FGL80_07670) - 1547589..1547795 (+) 207 WP_055307686.1 hypothetical protein -
  FGL80_RS07675 (FGL80_07675) - 1548005..1549153 (-) 1149 WP_147001921.1 Fic family protein -
  FGL80_RS07680 (FGL80_07680) - 1549375..1549848 (-) 474 WP_147001922.1 holin -
  FGL80_RS07685 (FGL80_07685) - 1549858..1550898 (-) 1041 WP_341874226.1 GH25 family lysozyme -
  FGL80_RS07690 (FGL80_07690) - 1550958..1551227 (-) 270 WP_095652997.1 hypothetical protein -
  FGL80_RS07695 (FGL80_07695) - 1551242..1554082 (-) 2841 WP_147001924.1 SGNH/GDSL hydrolase family protein -
  FGL80_RS07700 (FGL80_07700) - 1554075..1555541 (-) 1467 WP_147001925.1 phage tail protein -
  FGL80_RS07705 (FGL80_07705) - 1555541..1556056 (-) 516 WP_147001926.1 hypothetical protein -
  FGL80_RS07710 (FGL80_07710) - 1556185..1556391 (-) 207 WP_055307686.1 hypothetical protein -
  FGL80_RS07715 (FGL80_07715) - 1556649..1557527 (-) 879 WP_055307687.1 IS3 family transposase -
  FGL80_RS07720 (FGL80_07720) - 1557524..1557829 (-) 306 WP_048699725.1 transposase -
  FGL80_RS09065 - 1557894..1558067 (-) 174 WP_186737148.1 hypothetical protein -
  FGL80_RS07725 (FGL80_07725) - 1558119..1558298 (-) 180 WP_147001927.1 hypothetical protein -
  FGL80_RS07730 (FGL80_07730) - 1558309..1559445 (-) 1137 WP_244297926.1 helix-turn-helix domain-containing protein -
  FGL80_RS07735 (FGL80_07735) - 1559511..1559690 (-) 180 WP_147001929.1 hypothetical protein -
  FGL80_RS07740 (FGL80_07740) - 1559800..1560444 (-) 645 WP_147001930.1 hypothetical protein -
  FGL80_RS07745 (FGL80_07745) - 1560523..1561095 (-) 573 WP_244297964.1 DUF4145 domain-containing protein -
  FGL80_RS09070 - 1561251..1561421 (-) 171 WP_186737150.1 hypothetical protein -
  FGL80_RS09125 - 1562062..1562538 (-) 477 WP_244297928.1 hypothetical protein -
  FGL80_RS07760 (FGL80_07760) - 1562551..1562742 (-) 192 WP_055307729.1 hypothetical protein -
  FGL80_RS07765 (FGL80_07765) - 1562739..1563020 (-) 282 WP_147001932.1 helix-turn-helix transcriptional regulator -
  FGL80_RS09075 - 1563022..1563180 (-) 159 WP_186737152.1 hypothetical protein -
  FGL80_RS07770 (FGL80_07770) - 1563170..1563595 (-) 426 WP_244297930.1 dTDP-glucose pyrophosphorylase -
  FGL80_RS07775 (FGL80_07775) - 1563570..1564271 (-) 702 WP_147001933.1 putative HNHc nuclease -
  FGL80_RS07780 (FGL80_07780) ssb 1564284..1564697 (-) 414 WP_029509777.1 single-stranded DNA-binding protein Machinery gene
  FGL80_RS07785 (FGL80_07785) - 1564684..1565307 (-) 624 WP_147001934.1 ERF family protein -
  FGL80_RS07790 (FGL80_07790) - 1565304..1566218 (-) 915 WP_147001936.1 DUF1351 domain-containing protein -
  FGL80_RS07795 (FGL80_07795) - 1566303..1566560 (-) 258 WP_147001937.1 hypothetical protein -
  FGL80_RS07800 (FGL80_07800) - 1566564..1567358 (-) 795 WP_244297932.1 DNA replication protein -
  FGL80_RS07805 (FGL80_07805) - 1567358..1567798 (-) 441 WP_147001938.1 hypothetical protein -
  FGL80_RS07810 (FGL80_07810) - 1567795..1567995 (-) 201 WP_147001940.1 hypothetical protein -
  FGL80_RS07815 (FGL80_07815) - 1567985..1568182 (-) 198 WP_055307716.1 helix-turn-helix transcriptional regulator -
  FGL80_RS07820 (FGL80_07820) - 1568182..1568421 (-) 240 WP_055307715.1 hypothetical protein -
  FGL80_RS07825 (FGL80_07825) - 1568531..1568728 (-) 198 WP_048701061.1 hypothetical protein -
  FGL80_RS07830 (FGL80_07830) - 1568820..1569395 (+) 576 WP_147001942.1 hypothetical protein -
  FGL80_RS07835 (FGL80_07835) - 1569441..1570211 (-) 771 WP_147001944.1 phage antirepressor KilAC domain-containing protein -
  FGL80_RS07840 (FGL80_07840) - 1570295..1570531 (-) 237 WP_147001945.1 helix-turn-helix transcriptional regulator -
  FGL80_RS07845 (FGL80_07845) - 1570685..1571377 (+) 693 WP_147001947.1 XRE family transcriptional regulator -
  FGL80_RS07850 (FGL80_07850) - 1571445..1571984 (+) 540 WP_147001948.1 hypothetical protein -
  FGL80_RS07855 (FGL80_07855) - 1572050..1572427 (+) 378 WP_146975134.1 PH domain-containing protein -
  FGL80_RS07860 (FGL80_07860) - 1572544..1573611 (+) 1068 WP_147001950.1 site-specific integrase -
  FGL80_RS07865 (FGL80_07865) - 1574248..1574448 (-) 201 WP_010000672.1 cold-shock protein -
  FGL80_RS07870 (FGL80_07870) - 1575078..1575656 (-) 579 WP_055307706.1 hypothetical protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15158.73 Da        Isoelectric Point: 5.1750

>NTDB_id=377826 FGL80_RS07780 WP_029509777.1 1564284..1564697(-) (ssb) [Leuconostoc lactis strain CBA3622]
MNQVNLTGRLAKDVEVRYTQSGKAVASGSIAVNRRFKSEGQPDADFINFVMWGKPAENFANFTHKGSLVGMGGEWQTRNY
ENNSGQRVYVNELNATSFDLLEPKGGATKQPTQMNNADPFANSDNGKMEFDDSQLPF

Nucleotide


Download         Length: 414 bp        

>NTDB_id=377826 FGL80_RS07780 WP_029509777.1 1564284..1564697(-) (ssb) [Leuconostoc lactis strain CBA3622]
ATGAACCAAGTTAATTTAACAGGACGACTAGCAAAAGATGTTGAAGTGCGTTACACACAATCGGGTAAAGCAGTGGCCAG
CGGATCTATTGCGGTTAATCGGCGGTTTAAGTCGGAAGGTCAACCAGATGCAGACTTCATCAACTTCGTTATGTGGGGGA
AACCTGCAGAAAACTTTGCGAATTTTACACATAAGGGATCACTTGTCGGTATGGGTGGCGAATGGCAGACACGAAATTAT
GAAAACAACAGCGGACAACGTGTCTACGTTAATGAATTAAACGCCACAAGTTTTGACCTATTGGAACCGAAAGGTGGGGC
AACTAAACAACCGACCCAAATGAATAATGCTGATCCATTTGCAAATAGCGACAACGGCAAAATGGAATTTGATGACTCAC
AACTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

46.784

100

0.584
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.143

76.642

0.438
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.336

100

0.423
  ssbB/cilA Streptococcus mitis SK321

40.876

100

0.409
  ssbB/cilA Streptococcus mitis NCTC 12261

40.876

100

0.409
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.876

100

0.409
  ssbB/cilA Streptococcus pneumoniae Rx1

40.146

100

0.401
  ssbB/cilA Streptococcus pneumoniae D39

40.146

100

0.401
  ssbB/cilA Streptococcus pneumoniae R6

40.146

100

0.401
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.962

75.912

0.387
  ssbA Streptococcus mutans UA159

38.686

100

0.387

Multiple sequence alignment