Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FGL78_RS07230 | Genome accession | NZ_CP042390 |
| Coordinates | 1398638..1399051 (+) | Length | 137 a.a. |
| NCBI ID | WP_146976706.1 | Uniprot ID | - |
| Organism | Leuconostoc lactis strain CBA3626 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1391006..1430410 | 1398638..1399051 | within | 0 |
Gene organization within MGE regions
Location: 1391006..1430410
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FGL78_RS07160 (FGL78_07160) | - | 1391006..1392094 (-) | 1089 | WP_146976678.1 | site-specific integrase | - |
| FGL78_RS07165 (FGL78_07165) | - | 1392264..1392890 (-) | 627 | WP_146976680.1 | hypothetical protein | - |
| FGL78_RS07170 (FGL78_07170) | - | 1392942..1393361 (-) | 420 | WP_146976682.1 | ImmA/IrrE family metallo-endopeptidase | - |
| FGL78_RS07175 (FGL78_07175) | - | 1393358..1393720 (-) | 363 | WP_146977346.1 | helix-turn-helix transcriptional regulator | - |
| FGL78_RS07180 (FGL78_07180) | - | 1393996..1394199 (+) | 204 | WP_146976684.1 | hypothetical protein | - |
| FGL78_RS07185 (FGL78_07185) | - | 1394211..1394981 (+) | 771 | WP_146976686.1 | phage antirepressor KilAC domain-containing protein | - |
| FGL78_RS07190 (FGL78_07190) | - | 1394971..1395231 (+) | 261 | WP_146976688.1 | hypothetical protein | - |
| FGL78_RS07195 (FGL78_07195) | - | 1395348..1395587 (+) | 240 | WP_146976690.1 | hypothetical protein | - |
| FGL78_RS07200 (FGL78_07200) | - | 1395587..1395784 (+) | 198 | WP_146976692.1 | helix-turn-helix transcriptional regulator | - |
| FGL78_RS07205 (FGL78_07205) | - | 1395774..1395974 (+) | 201 | WP_146976694.1 | hypothetical protein | - |
| FGL78_RS07210 (FGL78_07210) | - | 1395975..1396772 (+) | 798 | WP_146976697.1 | DNA replication protein | - |
| FGL78_RS07215 (FGL78_07215) | - | 1396776..1397054 (+) | 279 | WP_146976699.1 | hypothetical protein | - |
| FGL78_RS07220 (FGL78_07220) | - | 1397117..1398031 (+) | 915 | WP_146976701.1 | DUF1351 domain-containing protein | - |
| FGL78_RS07225 (FGL78_07225) | - | 1398028..1398651 (+) | 624 | WP_146976704.1 | ERF family protein | - |
| FGL78_RS07230 (FGL78_07230) | ssb | 1398638..1399051 (+) | 414 | WP_146976706.1 | single-stranded DNA-binding protein | Machinery gene |
| FGL78_RS07235 (FGL78_07235) | - | 1399063..1399776 (+) | 714 | WP_146976709.1 | putative HNHc nuclease | - |
| FGL78_RS07245 (FGL78_07245) | - | 1399926..1400384 (+) | 459 | WP_146976711.1 | RusA family crossover junction endodeoxyribonuclease | - |
| FGL78_RS07250 (FGL78_07250) | - | 1400368..1400649 (+) | 282 | WP_146976714.1 | helix-turn-helix transcriptional regulator | - |
| FGL78_RS07255 (FGL78_07255) | - | 1400646..1400930 (+) | 285 | WP_146976716.1 | hypothetical protein | - |
| FGL78_RS07260 (FGL78_07260) | - | 1400927..1401118 (+) | 192 | WP_146976718.1 | hypothetical protein | - |
| FGL78_RS07265 (FGL78_07265) | - | 1401121..1401339 (+) | 219 | WP_055308135.1 | hypothetical protein | - |
| FGL78_RS07270 (FGL78_07270) | - | 1401382..1401804 (+) | 423 | WP_146976720.1 | DUF722 domain-containing protein | - |
| FGL78_RS09600 | - | 1402510..1402680 (+) | 171 | WP_154266264.1 | hypothetical protein | - |
| FGL78_RS07280 (FGL78_07280) | - | 1403215..1404171 (+) | 957 | WP_186731215.1 | DUF4747 family protein | - |
| FGL78_RS07285 (FGL78_07285) | - | 1404191..1404754 (+) | 564 | WP_146976725.1 | hypothetical protein | - |
| FGL78_RS07295 (FGL78_07295) | - | 1405352..1405903 (+) | 552 | WP_146976728.1 | hypothetical protein | - |
| FGL78_RS07300 (FGL78_07300) | - | 1405961..1406470 (+) | 510 | WP_146976730.1 | terminase small subunit | - |
| FGL78_RS07305 (FGL78_07305) | - | 1406454..1407779 (+) | 1326 | WP_146976732.1 | PBSX family phage terminase large subunit | - |
| FGL78_RS07310 (FGL78_07310) | - | 1407839..1409281 (+) | 1443 | WP_243129803.1 | phage portal protein | - |
| FGL78_RS07315 (FGL78_07315) | - | 1409284..1410477 (+) | 1194 | WP_146976738.1 | phage minor capsid protein | - |
| FGL78_RS07320 (FGL78_07320) | - | 1410584..1411195 (+) | 612 | WP_146976741.1 | phage scaffolding protein | - |
| FGL78_RS07325 (FGL78_07325) | - | 1411198..1412028 (+) | 831 | WP_146976743.1 | N4-gp56 family major capsid protein | - |
| FGL78_RS07330 (FGL78_07330) | - | 1412040..1412282 (+) | 243 | WP_146976745.1 | hypothetical protein | - |
| FGL78_RS07335 (FGL78_07335) | - | 1412320..1412709 (+) | 390 | WP_146976747.1 | hypothetical protein | - |
| FGL78_RS07340 (FGL78_07340) | - | 1412702..1413043 (+) | 342 | WP_186731216.1 | putative minor capsid protein | - |
| FGL78_RS07345 (FGL78_07345) | - | 1413043..1413384 (+) | 342 | WP_055308624.1 | minor capsid protein | - |
| FGL78_RS07350 (FGL78_07350) | - | 1413384..1413782 (+) | 399 | WP_146976752.1 | minor capsid protein | - |
| FGL78_RS07355 (FGL78_07355) | - | 1413782..1414249 (+) | 468 | WP_146976755.1 | phage tail protein | - |
| FGL78_RS07360 (FGL78_07360) | - | 1414291..1414629 (+) | 339 | WP_048701005.1 | hypothetical protein | - |
| FGL78_RS07365 (FGL78_07365) | - | 1414631..1415200 (+) | 570 | WP_029509800.1 | Gp15 family bacteriophage protein | - |
| FGL78_RS07370 (FGL78_07370) | - | 1415193..1418078 (+) | 2886 | WP_146976759.1 | tape measure protein | - |
| FGL78_RS07375 (FGL78_07375) | - | 1418078..1418806 (+) | 729 | WP_146976761.1 | distal tail protein Dit | - |
| FGL78_RS07380 (FGL78_07380) | - | 1418803..1424124 (+) | 5322 | WP_146976763.1 | phage tail spike protein | - |
| FGL78_RS07385 (FGL78_07385) | - | 1424135..1424530 (+) | 396 | WP_146974999.1 | hypothetical protein | - |
| FGL78_RS07390 (FGL78_07390) | - | 1424533..1424769 (+) | 237 | WP_146974997.1 | hypothetical protein | - |
| FGL78_RS07395 (FGL78_07395) | - | 1424771..1425037 (+) | 267 | WP_010004951.1 | hypothetical protein | - |
| FGL78_RS07400 (FGL78_07400) | - | 1425090..1425512 (+) | 423 | WP_146976765.1 | hypothetical protein | - |
| FGL78_RS07405 (FGL78_07405) | - | 1425524..1426465 (+) | 942 | WP_146976767.1 | lytic exoenzyme target recognition domain-containing protein | - |
| FGL78_RS07410 (FGL78_07410) | - | 1426598..1426792 (+) | 195 | WP_055308107.1 | CsbD family protein | - |
| FGL78_RS07415 (FGL78_07415) | - | 1426925..1428238 (+) | 1314 | WP_146976770.1 | Y-family DNA polymerase | - |
| FGL78_RS07420 (FGL78_07420) | - | 1428231..1428617 (+) | 387 | WP_146976772.1 | hypothetical protein | - |
| FGL78_RS07425 (FGL78_07425) | - | 1428598..1428849 (+) | 252 | WP_146976774.1 | hypothetical protein | - |
| FGL78_RS07430 (FGL78_07430) | - | 1428982..1429053 (+) | 72 | Protein_1423 | tRNA (guanosine(46)-N7)-methyltransferase TrmB | - |
| FGL78_RS07435 (FGL78_07435) | - | 1429502..1430068 (-) | 567 | WP_146976776.1 | hypothetical protein | - |
| FGL78_RS07440 (FGL78_07440) | - | 1430180..1430410 (-) | 231 | WP_029509299.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15172.73 Da Isoelectric Point: 5.1750
>NTDB_id=377635 FGL78_RS07230 WP_146976706.1 1398638..1399051(+) (ssb) [Leuconostoc lactis strain CBA3626]
MNQVNLTGRLTKDIELRYTQSGKAVASGSIAVNRRFKSEGQPDADFINFVMWGKAAENFANFTHKGSLVGLGGEWQTRNY
ENNSGQRVYVNELNATSFDLLEPKGGATKQPTQMNNADPFANSDNGKMEFDDSQLPF
MNQVNLTGRLTKDIELRYTQSGKAVASGSIAVNRRFKSEGQPDADFINFVMWGKAAENFANFTHKGSLVGLGGEWQTRNY
ENNSGQRVYVNELNATSFDLLEPKGGATKQPTQMNNADPFANSDNGKMEFDDSQLPF
Nucleotide
Download Length: 414 bp
>NTDB_id=377635 FGL78_RS07230 WP_146976706.1 1398638..1399051(+) (ssb) [Leuconostoc lactis strain CBA3626]
ATGAACCAAGTTAATTTGACAGGACGACTAACAAAAGATATTGAATTACGCTACACACAATCAGGAAAAGCGGTCGCAAG
TGGATCTATTGCGGTTAATCGGCGGTTTAAGTCGGAAGGGCAACCTGATGCAGACTTCATCAATTTCGTGATGTGGGGTA
AGGCGGCTGAAAACTTTGCGAACTTCACACACAAAGGCTCACTAGTTGGTCTAGGTGGTGAATGGCAGACGCGTAACTAT
GAAAACAACAGCGGACAACGTGTCTACGTTAATGAATTAAACGCCACAAGTTTTGACCTATTGGAACCGAAAGGTGGGGC
AACTAAACAACCGACCCAAATGAATAATGCTGATCCATTTGCAAATAGCGACAACGGCAAAATGGAATTTGATGACTCAC
AACTACCATTCTAA
ATGAACCAAGTTAATTTGACAGGACGACTAACAAAAGATATTGAATTACGCTACACACAATCAGGAAAAGCGGTCGCAAG
TGGATCTATTGCGGTTAATCGGCGGTTTAAGTCGGAAGGGCAACCTGATGCAGACTTCATCAATTTCGTGATGTGGGGTA
AGGCGGCTGAAAACTTTGCGAACTTCACACACAAAGGCTCACTAGTTGGTCTAGGTGGTGAATGGCAGACGCGTAACTAT
GAAAACAACAGCGGACAACGTGTCTACGTTAATGAATTAAACGCCACAAGTTTTGACCTATTGGAACCGAAAGGTGGGGC
AACTAAACAACCGACCCAAATGAATAATGCTGATCCATTTGCAAATAGCGACAACGGCAAAATGGAATTTGATGACTCAC
AACTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
47.368 |
100 |
0.591 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.048 |
76.642 |
0.453 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
43.796 |
100 |
0.438 |
| ssbB/cilA | Streptococcus mitis SK321 |
42.336 |
100 |
0.423 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
42.336 |
100 |
0.423 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
42.336 |
100 |
0.423 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
41.606 |
100 |
0.416 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
41.606 |
100 |
0.416 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
41.606 |
100 |
0.416 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
52.885 |
75.912 |
0.401 |
| ssbA | Streptococcus mutans UA159 |
39.416 |
100 |
0.394 |