Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NWAT_RS02005 Genome accession   NC_014315
Coordinates   420752..421972 (-) Length   406 a.a.
NCBI ID   WP_013219483.1    Uniprot ID   D8KA58
Organism   Nitrosococcus watsonii C-113     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 415752..426972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWAT_RS01970 (Nwat_0399) nadA 416358..417455 (+) 1098 WP_013219476.1 quinolinate synthase NadA -
  NWAT_RS01975 (Nwat_0400) - 417514..417735 (+) 222 WP_013219477.1 zinc-finger domain-containing protein -
  NWAT_RS01980 (Nwat_0401) - 417808..418008 (-) 201 WP_013219478.1 DUF2905 domain-containing protein -
  NWAT_RS01985 (Nwat_0402) - 418052..419005 (+) 954 WP_013219479.1 Nudix family hydrolase -
  NWAT_RS01990 (Nwat_0403) yacG 419013..419201 (-) 189 WP_013219480.1 DNA gyrase inhibitor YacG -
  NWAT_RS01995 (Nwat_0404) coaE 419207..419857 (-) 651 WP_013219481.1 dephospho-CoA kinase -
  NWAT_RS02000 (Nwat_0405) pilD 419866..420732 (-) 867 WP_013219482.1 A24 family peptidase Machinery gene
  NWAT_RS02005 (Nwat_0406) pilC 420752..421972 (-) 1221 WP_013219483.1 type II secretion system F family protein Machinery gene
  NWAT_RS02010 (Nwat_0407) pilB 421977..423692 (-) 1716 WP_041350397.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NWAT_RS17950 lptM 423936..424034 (+) 99 WP_157679984.1 LPS translocon maturation chaperone LptM -
  NWAT_RS02015 (Nwat_0408) lysA 424038..425288 (+) 1251 WP_198342191.1 diaminopimelate decarboxylase -
  NWAT_RS02020 (Nwat_0409) - 425339..426010 (+) 672 WP_013219486.1 class I SAM-dependent methyltransferase -
  NWAT_RS02025 (Nwat_0410) dapF 426050..426880 (+) 831 WP_013219487.1 diaminopimelate epimerase -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44250.47 Da        Isoelectric Point: 10.1337

>NTDB_id=37763 NWAT_RS02005 WP_013219483.1 420752..421972(-) (pilC) [Nitrosococcus watsonii C-113]
MAQAATKQQIFIWEGANRQGQKIKGEVGGKNLSMVKADLRRQGIAPLKVRKKPRPLLGQRKKKITPKEIAIFSRQLATMM
AAGVPLVQAFEIIGRGHESASMQEMVLKIKGEVEGGGTLAEALKQHPRQFDPLFCNLVHAGEQSGTLETLLDKIAMYKEK
TEAIKGKIKKALFYPTAVVVVAFIITAILLIFVIPQFEALFQNFGADLPALTLLVLKLSALFQEWWWAIFGAMGGAVYGL
IEAKRRSQKINHLFDKLLLKLPVIGEILNKATIARYARTLSTMFAAGVPLVEAMVSVAGAAGNSVYTQAILRIRDEVSTG
TQLQAAMRSSQLFPNMVVQMVAIGEEAGSIDQMLGKVADFYEEEVDNAVDALSSLLEPLIMAILGVLVGGLVIAMYLPIF
KMGSVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=37763 NWAT_RS02005 WP_013219483.1 420752..421972(-) (pilC) [Nitrosococcus watsonii C-113]
ATGGCACAAGCGGCAACAAAACAGCAGATTTTTATATGGGAAGGCGCTAACCGGCAAGGACAGAAAATTAAAGGCGAAGT
GGGCGGTAAAAACCTCAGTATGGTGAAAGCGGATCTACGACGCCAGGGTATTGCACCTCTCAAGGTACGCAAAAAGCCTA
GACCCTTGCTTGGTCAGCGCAAGAAGAAAATCACCCCGAAGGAGATCGCGATATTTAGCCGCCAGCTTGCAACCATGATG
GCTGCGGGCGTGCCCCTGGTTCAAGCCTTTGAAATTATAGGCCGTGGCCATGAAAGTGCTTCCATGCAAGAGATGGTCCT
AAAAATCAAGGGAGAAGTGGAAGGTGGTGGTACCCTGGCCGAAGCACTTAAACAACATCCACGGCAGTTTGACCCGCTTT
TCTGCAATCTGGTCCATGCGGGAGAGCAATCCGGCACCCTGGAGACCCTGCTGGATAAAATTGCCATGTATAAAGAAAAG
ACAGAAGCCATCAAGGGAAAGATAAAAAAAGCATTATTTTATCCTACTGCCGTGGTGGTGGTCGCTTTTATCATTACTGC
TATTTTGCTCATCTTTGTTATTCCCCAATTTGAGGCTTTGTTCCAGAATTTCGGCGCTGATCTGCCCGCGCTTACCTTGC
TGGTCCTCAAGCTTTCCGCTCTTTTTCAGGAATGGTGGTGGGCTATTTTCGGAGCTATGGGAGGCGCTGTCTACGGTCTT
ATAGAGGCTAAACGGCGCTCGCAAAAGATTAACCATCTCTTCGATAAACTACTACTCAAATTGCCGGTGATCGGCGAAAT
CCTGAATAAGGCCACTATCGCCCGGTACGCCCGTACCCTCTCCACCATGTTTGCGGCTGGCGTCCCCTTGGTTGAAGCCA
TGGTTTCCGTGGCTGGTGCTGCGGGTAATTCTGTCTATACCCAGGCCATCCTCCGCATACGCGATGAGGTCTCCACCGGC
ACCCAGCTGCAAGCGGCCATGCGCAGTAGTCAATTATTTCCTAACATGGTGGTGCAAATGGTGGCTATCGGGGAAGAGGC
AGGTTCCATCGATCAGATGCTGGGCAAAGTGGCGGATTTCTACGAGGAAGAAGTCGATAATGCCGTTGACGCCCTGAGCA
GCTTGCTAGAACCTCTGATCATGGCGATACTAGGCGTTCTGGTAGGCGGCCTTGTTATTGCCATGTACTTACCCATCTTC
AAAATGGGCTCGGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(277-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D8KA58

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.867

100

0.589
  pilC Legionella pneumophila strain ERS1305867

59.343

97.537

0.579
  pilC Acinetobacter baumannii D1279779

58.186

97.783

0.569
  pilC Acinetobacter baylyi ADP1

56.02

100

0.562
  pilG Neisseria gonorrhoeae MS11

47.891

99.261

0.475
  pilG Neisseria meningitidis 44/76-A

47.891

99.261

0.475
  pilC Vibrio campbellii strain DS40M4

40.876

100

0.414
  pilC Vibrio cholerae strain A1552

42.172

97.537

0.411
  pilC Thermus thermophilus HB27

35.252

100

0.362

Multiple sequence alignment