Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HPLT_RS03865 Genome accession   NC_017362
Coordinates   804595..806115 (-) Length   506 a.a.
NCBI ID   WP_000611022.1    Uniprot ID   -
Organism   Helicobacter pylori Lithuania75     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 799595..811115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPLT_RS03845 (HPLT_03975) hofF 800102..801601 (+) 1500 WP_001108235.1 outer membrane beta-barrel protein HofF -
  HPLT_RS03855 - 801815..802475 (-) 661 Protein_742 restriction endonuclease subunit S -
  HPLT_RS03860 (HPLT_03995) - 802510..804570 (-) 2061 WP_001158856.1 heavy metal translocating P-type ATPase -
  HPLT_RS03865 (HPLT_04000) comM 804595..806115 (-) 1521 WP_000611022.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HPLT_RS03870 (HPLT_04005) def 806121..806645 (-) 525 WP_001185840.1 peptide deformylase -
  HPLT_RS03875 (HPLT_04010) clpP 806650..807237 (-) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  HPLT_RS03880 (HPLT_04015) tig 807258..808613 (-) 1356 WP_001047733.1 trigger factor -
  HPLT_RS03885 (HPLT_04020) - 808725..809561 (-) 837 WP_001037751.1 outer membrane protein -
  HPLT_RS03890 (HPLT_04025) hpaA 809594..810376 (-) 783 WP_000646675.1 flagellar sheath lipoprotein HpaA -
  HPLT_RS03895 (HPLT_04030) moaC 810495..810971 (-) 477 WP_001131576.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57214.18 Da        Isoelectric Point: 8.3899

>NTDB_id=37762 HPLT_RS03865 WP_000611022.1 804595..806115(-) (comM) [Helicobacter pylori Lithuania75]
MINTIFCATMQRGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNPNIFPMLLDIAIKRPHAKVIAPKANEELFSLIPNLQCFFVDHFKE
ALEILQNPETKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYETSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSTFNGKLNEEQIERFCPLNAEAQKLLEQAVERFNLSMRSINKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=37762 HPLT_RS03865 WP_000611022.1 804595..806115(-) (comM) [Helicobacter pylori Lithuania75]
ATGATCAACACGATATTTTGCGCGACCATGCAAAGGGGGGTGGCAGAAATCGTGGCCGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCAGGATTGGCTAATAATTCTATCCAAGAAGCCAAACAGCGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCTTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATCCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAGCGCCCCCATGCTAAAG
TCATTGCGCCTAAGGCTAATGAGGAGCTTTTTTCGCTTATCCCTAATTTGCAATGCTTTTTTGTGGATCATTTTAAAGAA
GCTTTAGAAATCTTACAAAACCCTGAAACCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAGTTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCTGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATCTTGCCTCCATTAAGCCTGAATGAAATCTTAGAAGCGACAAAATTACGCATTTTAAGCGAGCAAGACAG
CGCCTATTACCCTTTAAGGAGTTTTAGAAACCCTCACCAGAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
GAGAGCCAAAACCTGGCGAAATCGCACTAGCGCATAACGGCATGCTTTTTTTTGATGAACTGCCCCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTAGTGATCTCACGAGTGCATAGCAAGATTGAATACGAAAC
CTCTTTTTTATTTGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCGCTACCAAAGCATGCCGTTGCCAAG
ACAGGGAGATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGATAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAATTGGTATTATTAGCTTTCAAGCAGCA
AAAGTTAAGGAAACAGAGCACTTTTAATGGTAAGCTTAACGAAGAGCAGATCGAACGATTTTGTCCTTTAAACGCTGAAG
CACAAAAGTTGTTAGAACAAGCGGTTGAAAGGTTTAATCTGTCCATGCGCTCTATTAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

98.221

100

0.982
  comM Acinetobacter baylyi ADP1

36.399

100

0.368

Multiple sequence alignment