Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AOLE_RS17820 Genome accession   NC_014259
Coordinates   3793226..3794452 (+) Length   408 a.a.
NCBI ID   WP_013199080.1    Uniprot ID   A0AAN0PBS1
Organism   Acinetobacter oleivorans DR1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3788226..3799452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOLE_RS17785 (AOLE_17760) rimP 3788893..3789420 (-) 528 WP_004795010.1 ribosome maturation factor RimP -
  AOLE_RS17805 (AOLE_17770) secG 3790058..3790387 (-) 330 WP_004795012.1 preprotein translocase subunit SecG -
  AOLE_RS17810 (AOLE_17775) tpiA 3790400..3791194 (-) 795 WP_013199077.1 triose-phosphate isomerase -
  AOLE_RS17815 (AOLE_17785) pilB 3791486..3793198 (+) 1713 WP_023274331.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AOLE_RS17820 (AOLE_17790) pilC 3793226..3794452 (+) 1227 WP_013199080.1 type II secretion system F family protein Machinery gene
  AOLE_RS20825 (AOLE_17795) pilD 3794452..3795312 (+) 861 WP_013199081.1 A24 family peptidase Machinery gene
  AOLE_RS17830 (AOLE_17800) coaE 3795314..3795910 (+) 597 WP_013199082.1 dephospho-CoA kinase -
  AOLE_RS17835 (AOLE_17805) - 3795907..3796821 (-) 915 WP_013199083.1 DMT family transporter -
  AOLE_RS17840 (AOLE_17810) rlmB 3796857..3797606 (-) 750 WP_004795029.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  AOLE_RS17845 (AOLE_17815) - 3797709..3798035 (-) 327 WP_004795031.1 pyrimidine/purine nucleoside phosphorylase -
  AOLE_RS17850 (AOLE_17820) - 3798112..3799422 (-) 1311 WP_013199084.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44980.40 Da        Isoelectric Point: 9.9566

>NTDB_id=37699 AOLE_RS17820 WP_013199080.1 3793226..3794452(+) (pilC) [Acinetobacter oleivorans DR1]
MTVKKAQLMPTFAYDGVDRKGVKIKGELSAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDKLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFILIIVIGAIIA
AFLEAKKRSKKFRDSLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNIIYEQAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVVAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=37699 AOLE_RS17820 WP_013199080.1 3793226..3794452(+) (pilC) [Acinetobacter oleivorans DR1]
ATGACTGTCAAAAAGGCACAATTGATGCCGACTTTTGCTTATGATGGGGTTGACCGTAAAGGCGTAAAAATTAAGGGGGA
ACTTTCGGCTAAAAATATGGCTTTAGCCAAAGTCACCCTACGCAAGCAAGGTGTAACTGTTCGTAATATTCGGGAAAAGC
GTAAAAATATTCTTGAAGGTTTATTTAAGAAAAAAGTATCAACGCTCGATATCACGATTTTCACGCGACAACTTGCAACT
ATGATGAAAGCTGGTGTCCCACTGGTACAAGGTTTTGAAATTGTGGCAGAAGGTCTAGAAAACCCAGCTATGCGCGAGGT
GGTACTCGGTATTAAAGGTGAAGTTGAAGGTGGTAGTACTTTTGCTTCAGCTCTAAGAAAGTATCCTCAGCACTTCGATA
AACTGTTTTGCTCGCTTGTAGAATCTGGCGAACAGTCTGGTGCGCTTGAAACCATGCTGGACCGCGTGGCAATTTACAAA
GAAAAAAGTGAATTGCTTAAGCAGAAAATTAAGAAAGCTATGAAATATCCAGCAACGGTTATTGTGGTTGCGGTGGTTGT
TACCATTATTTTGATGGTTAAAGTAGTTCCCGTCTTCCAAGATCTGTTTTCTTCCTTTGGCGCAGATCTTCCTGCTTTTA
CACAAATGGTCGTAAATATGTCGAAATGGATGCAGGAATACTGGTTCATTCTGATTATTGTGATCGGTGCAATCATTGCA
GCATTTCTGGAAGCTAAAAAGCGCAGTAAAAAATTCCGTGATAGTTTAGACAAACTTGCCCTGAAACTACCGATCTTTGG
TGATCTGGTTTATAAGGCGATTATTGCGCGTTACAGCCGTACTTTAGCAACAACTTTTGCAGCTGGTGTTCCTCTCATTG
ATGCGCTTGAATCAACGGCTGGTGCAACCAATAATATTATTTACGAACAAGCTGTCATGAAAATTCGTGAAGATGTAGCT
ACAGGTCAACAACTCCAATTTGCGATGCGCGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCAACCTACTATGAAAATGAAGTTGATAATGCCGTTGATGGCT
TAACTTCAATGATGGAACCTTTAATTATGGCAATTTTAGGGGTACTTGTAGGCGGTCTGGTTGTTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

96.078

100

0.961
  pilC Acinetobacter baylyi ADP1

85.294

100

0.853
  pilC Pseudomonas stutzeri DSM 10701

59.95

97.304

0.583
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria gonorrhoeae MS11

46.482

97.549

0.453
  pilG Neisseria meningitidis 44/76-A

46.482

97.549

0.453
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.587

100

0.407
  pilC Thermus thermophilus HB27

37.157

98.284

0.365

Multiple sequence alignment