Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | FPZ22_RS09875 | Genome accession | NZ_CP042218 |
| Coordinates | 2145159..2146313 (-) | Length | 384 a.a. |
| NCBI ID | WP_246121038.1 | Uniprot ID | - |
| Organism | Luteimonas granuli strain Gr-4 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2140159..2151313
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FPZ22_RS09850 (FPZ22_09850) | - | 2140758..2141174 (+) | 417 | Protein_1952 | NUDIX domain-containing protein | - |
| FPZ22_RS09855 (FPZ22_09855) | - | 2141396..2141878 (+) | 483 | WP_246120686.1 | thiamine phosphate synthase | - |
| FPZ22_RS09860 (FPZ22_09860) | coaE | 2141967..2142593 (-) | 627 | WP_144892570.1 | dephospho-CoA kinase | - |
| FPZ22_RS09865 (FPZ22_09865) | - | 2142694..2144160 (+) | 1467 | WP_144892572.1 | Fic family protein | - |
| FPZ22_RS09870 (FPZ22_09870) | pilD | 2144295..2145155 (-) | 861 | WP_144892574.1 | A24 family peptidase | Machinery gene |
| FPZ22_RS09875 (FPZ22_09875) | pilC | 2145159..2146313 (-) | 1155 | WP_246121038.1 | type II secretion system F family protein | Machinery gene |
| FPZ22_RS09880 (FPZ22_09880) | pilB | 2146586..2148310 (-) | 1725 | WP_144892578.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| FPZ22_RS09885 (FPZ22_09885) | - | 2148350..2149852 (-) | 1503 | WP_144892580.1 | hypothetical protein | - |
| FPZ22_RS09890 (FPZ22_09890) | - | 2149849..2150463 (-) | 615 | WP_144892583.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 384 a.a. Molecular weight: 41666.24 Da Isoelectric Point: 9.6237
>NTDB_id=376062 FPZ22_RS09875 WP_246121038.1 2145159..2146313(-) (pilC) [Luteimonas granuli strain Gr-4]
MKGEQSAKNANLLRAELRRQGITPTVVKPKPKPLFGGAGRKISAKEIAVFSRQLATMIKSGVPIVQSLEIIAGGNKNPRM
KTLVDSLRLDIEGGSSIFEAMSKHPVQFDELYRNLVKAGEGAGVLETVLETIATYKENIESLKGKIKKALFYPATVVAVA
LIVSSILLVFVVPQFESVFANFGADLPAFTKLIVAASDFMVAWWWLILLIVGGSIFAAIFMFKRSPAFQHFCDRAILKVP
VIGQVMHNSSIARFARTLATTFKAGVPLVEALAIVAGATGNSVYEKATHEIKDDVAVGFQLNMAMRQVNLFPHMVTQMTA
IGEEAGALDTMLFKVAEFYEEEVNNAVDALSSLLEPLIMIFIGIVVGSMVVGMYLPIFKLAAVV
MKGEQSAKNANLLRAELRRQGITPTVVKPKPKPLFGGAGRKISAKEIAVFSRQLATMIKSGVPIVQSLEIIAGGNKNPRM
KTLVDSLRLDIEGGSSIFEAMSKHPVQFDELYRNLVKAGEGAGVLETVLETIATYKENIESLKGKIKKALFYPATVVAVA
LIVSSILLVFVVPQFESVFANFGADLPAFTKLIVAASDFMVAWWWLILLIVGGSIFAAIFMFKRSPAFQHFCDRAILKVP
VIGQVMHNSSIARFARTLATTFKAGVPLVEALAIVAGATGNSVYEKATHEIKDDVAVGFQLNMAMRQVNLFPHMVTQMTA
IGEEAGALDTMLFKVAEFYEEEVNNAVDALSSLLEPLIMIFIGIVVGSMVVGMYLPIFKLAAVV
Nucleotide
Download Length: 1155 bp
>NTDB_id=376062 FPZ22_RS09875 WP_246121038.1 2145159..2146313(-) (pilC) [Luteimonas granuli strain Gr-4]
ATGAAGGGCGAGCAGTCGGCCAAGAACGCCAACCTGCTGCGCGCCGAGCTGCGCCGCCAGGGCATCACGCCCACCGTGGT
CAAGCCCAAGCCCAAGCCCCTGTTCGGCGGCGCCGGACGCAAGATCTCGGCCAAGGAAATCGCGGTCTTCAGTCGCCAGC
TGGCGACCATGATCAAGTCCGGCGTGCCGATCGTGCAGTCGCTGGAGATCATCGCGGGGGGCAACAAGAATCCGCGGATG
AAGACGCTGGTGGACAGCCTGCGGCTGGACATCGAGGGCGGCTCCTCGATCTTCGAGGCCATGAGCAAGCATCCGGTGCA
GTTCGACGAGCTGTACCGCAACCTCGTGAAGGCCGGCGAGGGCGCGGGCGTGCTGGAGACGGTGCTCGAGACCATCGCGA
CCTACAAGGAAAACATCGAAAGCCTGAAGGGCAAGATCAAGAAGGCGCTGTTCTACCCGGCGACCGTCGTTGCCGTAGCG
CTCATCGTGAGCTCCATCCTGCTGGTGTTCGTGGTGCCCCAGTTCGAGTCGGTCTTCGCGAACTTCGGCGCGGACCTGCC
CGCGTTCACCAAGCTGATCGTGGCGGCGTCGGACTTCATGGTGGCCTGGTGGTGGCTGATCCTGCTGATCGTGGGCGGAT
CGATCTTCGCGGCGATCTTCATGTTCAAGCGCTCGCCGGCGTTCCAGCATTTCTGCGACCGGGCCATCCTGAAAGTCCCG
GTGATCGGCCAGGTCATGCACAACTCGTCCATCGCCCGCTTCGCGCGCACCCTGGCGACCACCTTCAAGGCGGGCGTCCC
GCTGGTGGAAGCACTCGCCATCGTCGCCGGCGCCACCGGCAACTCGGTGTATGAAAAGGCGACGCACGAGATCAAGGACG
ACGTGGCCGTCGGCTTCCAGCTGAACATGGCCATGAGGCAGGTCAACCTCTTCCCGCACATGGTCACGCAGATGACCGCC
ATCGGCGAGGAGGCCGGCGCGCTCGACACCATGCTGTTCAAGGTGGCCGAGTTCTACGAGGAAGAGGTCAACAACGCGGT
GGACGCGCTCTCCAGCCTGCTCGAGCCCCTGATCATGATCTTCATCGGCATCGTGGTCGGCAGCATGGTGGTGGGCATGT
ACCTGCCGATCTTCAAGCTCGCGGCTGTCGTCTGA
ATGAAGGGCGAGCAGTCGGCCAAGAACGCCAACCTGCTGCGCGCCGAGCTGCGCCGCCAGGGCATCACGCCCACCGTGGT
CAAGCCCAAGCCCAAGCCCCTGTTCGGCGGCGCCGGACGCAAGATCTCGGCCAAGGAAATCGCGGTCTTCAGTCGCCAGC
TGGCGACCATGATCAAGTCCGGCGTGCCGATCGTGCAGTCGCTGGAGATCATCGCGGGGGGCAACAAGAATCCGCGGATG
AAGACGCTGGTGGACAGCCTGCGGCTGGACATCGAGGGCGGCTCCTCGATCTTCGAGGCCATGAGCAAGCATCCGGTGCA
GTTCGACGAGCTGTACCGCAACCTCGTGAAGGCCGGCGAGGGCGCGGGCGTGCTGGAGACGGTGCTCGAGACCATCGCGA
CCTACAAGGAAAACATCGAAAGCCTGAAGGGCAAGATCAAGAAGGCGCTGTTCTACCCGGCGACCGTCGTTGCCGTAGCG
CTCATCGTGAGCTCCATCCTGCTGGTGTTCGTGGTGCCCCAGTTCGAGTCGGTCTTCGCGAACTTCGGCGCGGACCTGCC
CGCGTTCACCAAGCTGATCGTGGCGGCGTCGGACTTCATGGTGGCCTGGTGGTGGCTGATCCTGCTGATCGTGGGCGGAT
CGATCTTCGCGGCGATCTTCATGTTCAAGCGCTCGCCGGCGTTCCAGCATTTCTGCGACCGGGCCATCCTGAAAGTCCCG
GTGATCGGCCAGGTCATGCACAACTCGTCCATCGCCCGCTTCGCGCGCACCCTGGCGACCACCTTCAAGGCGGGCGTCCC
GCTGGTGGAAGCACTCGCCATCGTCGCCGGCGCCACCGGCAACTCGGTGTATGAAAAGGCGACGCACGAGATCAAGGACG
ACGTGGCCGTCGGCTTCCAGCTGAACATGGCCATGAGGCAGGTCAACCTCTTCCCGCACATGGTCACGCAGATGACCGCC
ATCGGCGAGGAGGCCGGCGCGCTCGACACCATGCTGTTCAAGGTGGCCGAGTTCTACGAGGAAGAGGTCAACAACGCGGT
GGACGCGCTCTCCAGCCTGCTCGAGCCCCTGATCATGATCTTCATCGGCATCGTGGTCGGCAGCATGGTGGTGGGCATGT
ACCTGCCGATCTTCAAGCTCGCGGCTGTCGTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
54.427 |
100 |
0.544 |
| pilC | Pseudomonas stutzeri DSM 10701 |
53.646 |
100 |
0.536 |
| pilC | Acinetobacter baylyi ADP1 |
50.649 |
100 |
0.508 |
| pilC | Acinetobacter baumannii D1279779 |
50.39 |
100 |
0.505 |
| pilG | Neisseria gonorrhoeae MS11 |
44.935 |
100 |
0.451 |
| pilG | Neisseria meningitidis 44/76-A |
44.935 |
100 |
0.451 |
| pilC | Vibrio cholerae strain A1552 |
42.204 |
96.875 |
0.409 |
| pilC | Vibrio campbellii strain DS40M4 |
44.058 |
89.844 |
0.396 |
| pilC | Thermus thermophilus HB27 |
42.136 |
87.76 |
0.37 |