Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   FPZ22_RS09870 Genome accession   NZ_CP042218
Coordinates   2144295..2145155 (-) Length   286 a.a.
NCBI ID   WP_144892574.1    Uniprot ID   A0A518N5H1
Organism   Luteimonas granuli strain Gr-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2139295..2150155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPZ22_RS09850 (FPZ22_09850) - 2140758..2141174 (+) 417 Protein_1952 NUDIX domain-containing protein -
  FPZ22_RS09855 (FPZ22_09855) - 2141396..2141878 (+) 483 WP_246120686.1 thiamine phosphate synthase -
  FPZ22_RS09860 (FPZ22_09860) coaE 2141967..2142593 (-) 627 WP_144892570.1 dephospho-CoA kinase -
  FPZ22_RS09865 (FPZ22_09865) - 2142694..2144160 (+) 1467 WP_144892572.1 Fic family protein -
  FPZ22_RS09870 (FPZ22_09870) pilD 2144295..2145155 (-) 861 WP_144892574.1 A24 family peptidase Machinery gene
  FPZ22_RS09875 (FPZ22_09875) pilC 2145159..2146313 (-) 1155 WP_246121038.1 type II secretion system F family protein Machinery gene
  FPZ22_RS09880 (FPZ22_09880) pilB 2146586..2148310 (-) 1725 WP_144892578.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FPZ22_RS09885 (FPZ22_09885) - 2148350..2149852 (-) 1503 WP_144892580.1 hypothetical protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 31378.25 Da        Isoelectric Point: 7.8928

>NTDB_id=376061 FPZ22_RS09870 WP_144892574.1 2144295..2145155(-) (pilD) [Luteimonas granuli strain Gr-4]
MAFLDQNPEIGYPLVAGLGLLVGSFLNVVILRLPRRMEWQWKRDSREMLGEPELYDPPPPGIVVERSHCPHCGHQLSWYE
NIPVLSWLALRGKCRSCKAPISIQYPAIELLTMLLVLACVWRFGFGWQGFGAGLLTCFLIALSGIDLRTQLLPDSLTLPL
MWLGLIAAVENLYIGPKEALLGAIAGYVSLWSVWWLFKQITGKEGMGHGDFKLLAALGAWCGLAGILPIILVSSLVGALV
GGAWLGIKGRDRATPIPFGPFLAAAGWIVFMWGEQMVGAYRAYAGF

Nucleotide


Download         Length: 861 bp        

>NTDB_id=376061 FPZ22_RS09870 WP_144892574.1 2144295..2145155(-) (pilD) [Luteimonas granuli strain Gr-4]
ATGGCCTTCCTCGACCAGAACCCCGAGATCGGCTATCCGCTGGTCGCAGGCCTCGGCCTGCTCGTCGGCAGCTTCCTGAA
CGTGGTCATCCTGCGCCTGCCCCGGCGCATGGAGTGGCAGTGGAAACGTGACAGCCGCGAGATGCTGGGCGAGCCCGAGC
TGTACGACCCGCCGCCGCCCGGCATCGTGGTCGAGCGCTCGCACTGTCCGCACTGCGGCCACCAGCTGAGCTGGTACGAG
AACATCCCGGTGCTGAGCTGGCTGGCGCTGCGCGGGAAGTGCCGCAGCTGCAAGGCGCCGATCTCGATCCAGTATCCGGC
GATAGAACTGCTGACCATGCTGCTGGTGCTGGCCTGCGTCTGGCGCTTCGGCTTCGGCTGGCAGGGCTTCGGCGCCGGCC
TGCTGACCTGCTTCCTGATCGCGCTGTCGGGCATCGACCTGCGCACCCAGCTGCTGCCGGATTCGCTGACCCTTCCCCTG
ATGTGGCTGGGGCTGATCGCGGCCGTCGAGAACCTCTACATCGGCCCGAAGGAGGCGCTGCTGGGCGCCATCGCCGGCTA
CGTGAGCCTGTGGAGCGTCTGGTGGCTGTTCAAGCAGATCACCGGCAAGGAAGGCATGGGCCACGGCGACTTCAAGCTGC
TGGCCGCGCTGGGCGCCTGGTGCGGCCTGGCGGGCATCCTGCCGATCATCCTGGTGTCGTCGCTGGTCGGCGCACTGGTG
GGCGGCGCCTGGCTGGGCATCAAGGGCCGCGACCGCGCCACCCCGATCCCCTTCGGCCCCTTCCTCGCCGCCGCCGGCTG
GATCGTCTTCATGTGGGGCGAGCAGATGGTCGGCGCCTACCGCGCCTACGCCGGCTTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(134-241)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A518N5H1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

49.477

100

0.496
  pilD Acinetobacter nosocomialis M2

49.466

98.252

0.486
  pilD Vibrio cholerae strain A1552

48.54

95.804

0.465
  pilD Vibrio campbellii strain DS40M4

49.248

93.007

0.458
  pilD Neisseria gonorrhoeae MS11

46.209

96.853

0.448

Multiple sequence alignment