Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   FPS98_RS06695 Genome accession   NZ_CP042161
Coordinates   1412698..1413942 (+) Length   414 a.a.
NCBI ID   WP_144614644.1    Uniprot ID   A0A517I4A4
Organism   Brevibacillus brevis strain HK544     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1407698..1418942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPS98_RS06670 (FPS98_06670) - 1408487..1408756 (+) 270 WP_144614637.1 DUF3243 domain-containing protein -
  FPS98_RS06675 (FPS98_06675) - 1408865..1409644 (+) 780 WP_016743377.1 YmfK family protein -
  FPS98_RS06680 (FPS98_06680) - 1409657..1410556 (+) 900 WP_144614639.1 helix-turn-helix domain-containing protein -
  FPS98_RS06685 (FPS98_06685) rimO 1410668..1412014 (+) 1347 WP_144614641.1 30S ribosomal protein S12 methylthiotransferase RimO -
  FPS98_RS06690 (FPS98_06690) pgsA 1412015..1412590 (+) 576 WP_017249262.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FPS98_RS06695 (FPS98_06695) cinA 1412698..1413942 (+) 1245 WP_144614644.1 competence/damage-inducible protein A Machinery gene
  FPS98_RS06700 (FPS98_06700) - 1413951..1415540 (+) 1590 WP_144614646.1 DEAD/DEAH box helicase -
  FPS98_RS06705 (FPS98_06705) recA 1415708..1416766 (+) 1059 WP_017249260.1 recombinase RecA Machinery gene
  FPS98_RS06710 (FPS98_06710) - 1416836..1417477 (+) 642 WP_144614648.1 RecX family transcriptional regulator -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44889.48 Da        Isoelectric Point: 4.9968

>NTDB_id=375808 FPS98_RS06695 WP_144614644.1 1412698..1413942(+) (cinA) [Brevibacillus brevis strain HK544]
MRAEIIAVGTELLLGQIANTNAQFLSQKLAEIGVGVYFHTVVGDNTERLLQVIRLASGRSDLVILTGGLGPTQDDLTKET
LAGHVGIELETNSEAMERIEKFFSQRGIVMTENNRKQALVLSGSHVFSNDFGMAPGMAIRHDSSTFVLLPGPPSELYPMV
ENYVMPYLTDLLPEKQVFHSHVLRFYGIGESALEEKLLDLIEKQDNPTIAPYAKEFEVTLRITAKAATVEEGEALILPVE
KEILSRVGQYMYGMGENSSLHDVLVSELKMRNETIACAESCTGGAIASLITSVPGSSQVFRGGVVCYTNEVKNQLLEVPD
SILQTDGAVSEKTAQLLAEHVREKLGATYGISVTGVAGPDPSEGKPVGLVYVGIAAEGIPTVVKELRLAGRRHAIVGRAA
KYALFYALQMQKER

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=375808 FPS98_RS06695 WP_144614644.1 1412698..1413942(+) (cinA) [Brevibacillus brevis strain HK544]
ATGAGAGCGGAGATTATCGCGGTAGGTACCGAACTTTTGTTAGGCCAGATCGCTAACACCAACGCACAGTTTCTTTCTCA
GAAGCTGGCGGAAATTGGCGTGGGAGTTTATTTTCATACGGTTGTGGGAGACAACACGGAGCGATTGCTACAAGTGATTC
GATTGGCATCAGGGCGATCTGACCTCGTCATTTTAACGGGTGGGCTAGGGCCGACTCAAGATGATTTGACGAAAGAAACC
TTGGCGGGGCATGTAGGCATTGAATTGGAAACGAATTCAGAGGCCATGGAGAGAATTGAAAAATTCTTTTCGCAACGTGG
GATTGTCATGACGGAGAACAATCGTAAGCAGGCGCTGGTGCTTTCAGGTAGCCATGTATTCTCCAACGATTTCGGGATGG
CGCCGGGGATGGCGATCCGTCATGACAGTAGTACGTTCGTGCTGTTGCCTGGACCACCAAGCGAGCTGTATCCAATGGTG
GAGAATTACGTGATGCCTTACTTGACCGATTTGCTCCCCGAAAAACAAGTGTTTCATTCTCATGTACTCCGGTTCTACGG
AATAGGCGAATCCGCCTTGGAGGAAAAACTGCTTGATTTGATCGAAAAGCAGGACAATCCAACGATCGCGCCATACGCCA
AAGAATTCGAAGTAACGCTGCGGATTACGGCAAAAGCTGCTACAGTCGAAGAAGGGGAAGCCCTAATCTTGCCTGTAGAA
AAAGAAATTCTCAGCCGTGTCGGCCAGTATATGTACGGGATGGGTGAGAACTCGTCGCTGCATGATGTGCTGGTTTCTGA
GCTGAAAATGAGAAATGAGACGATTGCTTGTGCAGAAAGCTGCACAGGTGGAGCAATTGCCTCGTTGATTACCTCTGTGC
CGGGAAGCTCGCAAGTGTTTCGTGGCGGGGTAGTCTGCTACACCAATGAAGTGAAAAATCAGCTGCTCGAAGTACCTGAT
TCCATTTTGCAAACAGATGGGGCAGTCAGTGAGAAAACAGCTCAATTGCTGGCTGAACATGTACGAGAAAAGCTGGGGGC
TACTTACGGGATTTCTGTTACGGGAGTGGCTGGACCCGATCCTTCCGAGGGCAAGCCTGTTGGCCTTGTTTACGTAGGGA
TCGCGGCAGAAGGAATACCTACAGTTGTAAAAGAGCTGCGCCTTGCTGGAAGAAGGCATGCAATCGTTGGGCGTGCCGCT
AAATACGCGTTGTTTTATGCGCTGCAAATGCAAAAAGAAAGGTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(259-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A517I4A4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.816

99.758

0.517
  cinA Streptococcus mitis SK321

49.257

97.585

0.481
  cinA Streptococcus mitis NCTC 12261

49.257

97.585

0.481
  cinA Streptococcus pneumoniae TIGR4

48.762

97.585

0.476
  cinA Streptococcus pneumoniae Rx1

48.515

97.585

0.473
  cinA Streptococcus pneumoniae R6

48.515

97.585

0.473
  cinA Streptococcus pneumoniae D39

48.267

97.585

0.471
  cinA Streptococcus mutans UA159

46.867

96.377

0.452
  cinA Streptococcus suis isolate S10

41.878

95.169

0.399

Multiple sequence alignment