Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   FPT06_RS04455 Genome accession   NZ_CP041994
Coordinates   905718..906668 (-) Length   316 a.a.
NCBI ID   WP_013730075.1    Uniprot ID   -
Organism   Streptococcus suis strain INT-01     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 900718..911668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPT06_RS04415 (FPT06_04415) - 900777..901964 (-) 1188 WP_013730078.1 acetate kinase -
  FPT06_RS04420 (FPT06_04420) comYH 902014..902967 (-) 954 WP_013730077.1 class I SAM-dependent methyltransferase Machinery gene
  FPT06_RS04425 (FPT06_04425) comGG 903024..903434 (-) 411 WP_009909099.1 competence type IV pilus minor pilin ComGG -
  FPT06_RS04430 (FPT06_04430) comGF/cglF 903412..903846 (-) 435 WP_009909097.1 competence type IV pilus minor pilin ComGF Machinery gene
  FPT06_RS04435 (FPT06_04435) comYE 903833..904126 (-) 294 WP_024390433.1 competence type IV pilus minor pilin ComGE Machinery gene
  FPT06_RS04440 (FPT06_04440) comGD 904098..904505 (-) 408 WP_009909093.1 competence type IV pilus minor pilin ComGD -
  FPT06_RS04445 (FPT06_04445) comYC 904486..904767 (-) 282 WP_009909092.1 competence type IV pilus major pilin ComGC Machinery gene
  FPT06_RS04450 (FPT06_04450) comYB 904769..905806 (-) 1038 WP_255195823.1 competence type IV pilus assembly protein ComGB Machinery gene
  FPT06_RS04455 (FPT06_04455) comYA 905718..906668 (-) 951 WP_013730075.1 competence type IV pilus ATPase ComGA Machinery gene
  FPT06_RS04460 (FPT06_04460) - 906754..907704 (+) 951 WP_002936565.1 S66 peptidase family protein -
  FPT06_RS04465 (FPT06_04465) - 907739..908104 (-) 366 WP_002936568.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35447.36 Da        Isoelectric Point: 5.9423

>NTDB_id=375223 FPT06_RS04455 WP_013730075.1 905718..906668(-) (comYA) [Streptococcus suis strain INT-01]
MIQEKARKLIEKAVADRVSDIYLVPRGESYQVYHRIMDEREFVQDLAEEEVTAIISHFKFLAGLNVGEKLRSQQGSCDYD
YGSGEISLRLSTVGDYRGKESLVIRLLYDNDKELKFWFEAAERLAEEIKGRGLYLFSGPVGSGKTTLMYHLARLKFPDKQ
ILTIEDPVEIKQEDMLQLQLNEAIGATYDNLIKLSLRHRPDLLIIGEIRDAETARAVIRASLTGATVFSTVHARSISGVY
ARMLELGVSPEELNNALQGIAYQRLIRGGGVVDFAKGNYQNHSADQWNAQIDRLFAAGHISLRQAETEKIALGSPA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=375223 FPT06_RS04455 WP_013730075.1 905718..906668(-) (comYA) [Streptococcus suis strain INT-01]
ATGATTCAAGAAAAAGCAAGAAAGTTGATTGAAAAGGCAGTGGCGGATAGGGTCAGTGACATTTATCTGGTTCCTCGCGG
GGAAAGCTATCAAGTTTATCATCGCATCATGGATGAACGGGAGTTTGTGCAAGACTTGGCTGAGGAGGAAGTAACAGCCA
TCATCAGCCATTTCAAGTTTTTAGCAGGTTTAAATGTTGGTGAAAAACTCCGTAGCCAGCAGGGTTCCTGTGACTATGAT
TATGGTAGCGGAGAGATTTCACTTCGCTTATCAACTGTCGGAGATTATCGTGGCAAGGAAAGTCTGGTGATCCGCTTGCT
CTATGACAATGACAAGGAACTCAAGTTCTGGTTTGAGGCGGCTGAGCGGCTTGCAGAAGAAATCAAGGGACGAGGGCTCT
ACCTTTTTTCGGGTCCAGTCGGCTCTGGTAAGACCACACTTATGTACCATCTTGCCAGGCTGAAATTCCCAGACAAGCAG
ATTTTGACCATCGAGGATCCTGTCGAAATCAAACAGGAGGACATGCTGCAACTCCAGCTCAATGAAGCCATCGGAGCCAC
CTACGACAATCTGATCAAACTGTCCCTCCGTCATCGACCAGACTTGCTCATCATCGGTGAAATTCGGGATGCGGAAACCG
CTCGAGCAGTCATTCGAGCCAGTCTGACAGGAGCGACGGTCTTCTCAACGGTTCACGCAAGGTCTATTTCGGGTGTCTAT
GCTCGTATGTTGGAATTGGGGGTCAGTCCTGAGGAGTTAAACAATGCCCTTCAAGGTATTGCCTATCAACGTTTAATCAG
GGGAGGAGGTGTGGTAGATTTTGCAAAGGGAAATTACCAAAACCATTCCGCAGACCAGTGGAATGCGCAAATTGATCGCC
TTTTTGCAGCAGGACATATCAGTCTTAGGCAGGCAGAAACAGAAAAAATTGCCCTTGGCTCGCCAGCGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus gordonii str. Challis substr. CH1

68.065

98.101

0.668
  comYA Streptococcus mutans UA159

67.203

98.418

0.661
  comYA Streptococcus mutans UA140

67.203

98.418

0.661
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

64.63

98.418

0.636
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

64.63

98.418

0.636
  comGA/cglA/cilD Streptococcus pneumoniae D39

64.63

98.418

0.636
  comGA/cglA/cilD Streptococcus pneumoniae R6

64.63

98.418

0.636
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

64.63

98.418

0.636
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

64.516

98.101

0.633
  comGA Lactococcus lactis subsp. cremoris KW2

53.628

100

0.538
  comGA Latilactobacillus sakei subsp. sakei 23K

41.155

87.658

0.361

Multiple sequence alignment