Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   FPT06_RS04365 Genome accession   NZ_CP041994
Coordinates   893772..894167 (-) Length   131 a.a.
NCBI ID   WP_002936524.1    Uniprot ID   -
Organism   Streptococcus suis strain INT-01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 888772..899167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPT06_RS04340 (FPT06_04340) rpsG 890168..890638 (-) 471 WP_002940031.1 30S ribosomal protein S7 -
  FPT06_RS04345 (FPT06_04345) rpsL 890655..891068 (-) 414 WP_002940030.1 30S ribosomal protein S12 -
  FPT06_RS04350 (FPT06_04350) groL 891300..892922 (-) 1623 WP_013730081.1 chaperonin GroEL -
  FPT06_RS04355 (FPT06_04355) groES 892934..893215 (-) 282 WP_002936521.1 co-chaperone GroES -
  FPT06_RS10715 - 893413..893658 (+) 246 WP_002936522.1 hypothetical protein -
  FPT06_RS04365 (FPT06_04365) ssbB 893772..894167 (-) 396 WP_002936524.1 single-stranded DNA-binding protein Machinery gene
  FPT06_RS04370 (FPT06_04370) - 894222..895001 (+) 780 WP_013730080.1 DUF2785 domain-containing protein -
  FPT06_RS04375 (FPT06_04375) ytpR 895035..895658 (-) 624 WP_002936532.1 YtpR family tRNA-binding protein -
  FPT06_RS04380 (FPT06_04380) - 895677..896633 (-) 957 WP_002936535.1 DUF1002 domain-containing protein -
  FPT06_RS04385 (FPT06_04385) - 896678..896998 (-) 321 WP_002936536.1 thioredoxin family protein -
  FPT06_RS04390 (FPT06_04390) - 896995..897279 (-) 285 WP_002936537.1 DUF4651 domain-containing protein -
  FPT06_RS04395 (FPT06_04395) pepA 897492..898553 (+) 1062 WP_002936538.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14876.76 Da        Isoelectric Point: 5.0026

>NTDB_id=375216 FPT06_RS04365 WP_002936524.1 893772..894167(-) (ssbB) [Streptococcus suis strain INT-01]
MYNKVILIGRLTAQPELTQTPNGKNLTRVTVAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGNKGSLISIDGELRTR
KYEKDGSNHYVTEILGQSFQLLESRAQRAMRENNAGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=375216 FPT06_RS04365 WP_002936524.1 893772..894167(-) (ssbB) [Streptococcus suis strain INT-01]
ATGTATAATAAAGTTATTTTAATCGGTCGCTTGACGGCCCAACCTGAACTCACTCAAACCCCTAACGGCAAAAATCTGAC
CCGTGTTACTGTCGCAGTCAACCGCCGTTTTAAGACGGAAAATGGCGAACGTGAAGCAGATTTTCTTAATGTCATTTTCT
GGGGCAAACTGGCGGAAACGCTTGTTTCCTATGGTAATAAAGGTAGTCTAATTTCCATTGATGGTGAATTGCGAACGCGA
AAATACGAAAAAGACGGCAGCAACCACTATGTGACAGAAATCTTAGGACAATCCTTCCAGCTGCTCGAAAGTCGGGCCCA
ACGTGCTATGCGTGAAAATAATGCTGGCGATGATCTAGCTGATTTGGTCTTAGAAGAGGAGGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Streptococcus sobrinus strain NIDR 6715-7

76.336

100

0.763
  ssbA Streptococcus mutans UA159

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae TIGR4

74.046

100

0.74
  ssbB/cilA Streptococcus pneumoniae R6

73.282

100

0.733
  ssbB/cilA Streptococcus mitis SK321

73.282

100

0.733
  ssbB/cilA Streptococcus pneumoniae D39

73.282

100

0.733
  ssbB/cilA Streptococcus mitis NCTC 12261

73.282

100

0.733
  ssbB/cilA Streptococcus pneumoniae Rx1

73.282

100

0.733
  ssbB Lactococcus lactis subsp. cremoris KW2

64.286

85.496

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

45.133

86.26

0.389
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.113

80.916

0.389

Multiple sequence alignment