Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FPL17_RS12440 Genome accession   NZ_CP041970
Coordinates   2714154..2715380 (+) Length   408 a.a.
NCBI ID   WP_078197602.1    Uniprot ID   -
Organism   Acinetobacter dispersus strain NCCP 16014     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2709154..2720380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL17_RS12405 (FPL17_12550) rimP 2709755..2710279 (-) 525 WP_159885334.1 ribosome maturation factor RimP -
  FPL17_RS12425 (FPL17_12570) secG 2710909..2711238 (-) 330 WP_078197608.1 preprotein translocase subunit SecG -
  FPL17_RS12430 (FPL17_12575) tpiA 2711251..2712042 (-) 792 WP_032864570.1 triose-phosphate isomerase -
  FPL17_RS12435 (FPL17_12580) pilB 2712417..2714129 (+) 1713 WP_159885336.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FPL17_RS12440 (FPL17_12585) pilC 2714154..2715380 (+) 1227 WP_078197602.1 type II secretion system F family protein Machinery gene
  FPL17_RS12445 (FPL17_12590) pilD 2715386..2716246 (+) 861 WP_159885338.1 prepilin peptidase Machinery gene
  FPL17_RS12450 (FPL17_12595) coaE 2716248..2716853 (+) 606 WP_159885340.1 dephospho-CoA kinase -
  FPL17_RS12455 (FPL17_12600) - 2716850..2717761 (-) 912 WP_159885342.1 DMT family transporter -
  FPL17_RS12460 (FPL17_12605) rlmB 2717792..2718541 (-) 750 WP_005191946.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  FPL17_RS12465 (FPL17_12610) - 2718710..2719036 (-) 327 WP_004802302.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44967.45 Da        Isoelectric Point: 9.8061

>NTDB_id=375080 FPL17_RS12440 WP_078197602.1 2714154..2715380(+) (pilC) [Acinetobacter dispersus strain NCCP 16014]
MAAKKAQMMPTFAYEGVDRKGAKIKGEVPARNMALAKVTLRKQGVTIKNIREKRKNILEGLMKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPITVVVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVEMSKWMQEYWFILIIVIGAIIA
SFLEAKKRSKKFRDLLDKMALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=375080 FPL17_RS12440 WP_078197602.1 2714154..2715380(+) (pilC) [Acinetobacter dispersus strain NCCP 16014]
ATGGCAGCTAAAAAAGCGCAAATGATGCCAACTTTTGCTTATGAAGGGGTCGACCGGAAAGGAGCAAAAATTAAAGGGGA
AGTACCAGCACGCAACATGGCTTTAGCAAAAGTCACCTTGCGTAAACAAGGCGTGACCATCAAAAACATTCGAGAAAAAC
GTAAAAATATTCTCGAAGGTCTGATGAAGAAAAAAGTCACGACACTCGATATCACCATCTTTACGCGCCAATTGGCAACC
ATGATGAAAGCGGGTGTCCCATTGGTACAAGGCTTTGAAATTGTCGCAGAGGGATTAGAAAATCCATCCATGCGTGAAGT
TGTTCTAGGTATTAAAGGCGAAGTTGAAGGCGGTAATACCTTTGCTGGCGCACTCAAAAAATACCCTCAATACTTTGATA
ATTTATTTTGTTCCTTAGTTGAATCTGGCGAACAGTCTGGTGCACTTGAAACCATGTTAGATCGCGTCGCGATTTACAAA
GAGAAGAGTGAACTACTAAAGCAGAAAATTAAAAAAGCGATGAAGTACCCGATCACAGTCGTTGTTGTTGCCGTCATTGT
CACCATTATTCTAATGGTGAAAGTCGTCCCAGTATTCCAAGATTTATTTAGCTCTTTTGGTGCAGATCTTCCCGCATTTA
CCAAAATGGTGGTAGAAATGTCGAAATGGATGCAAGAGTACTGGTTTATTTTGATTATTGTGATTGGTGCTATTATTGCT
TCCTTCTTGGAAGCAAAAAAACGCAGTAAAAAATTCAGAGATCTACTGGATAAAATGGCACTCAAAGCCCCAATTTTTGG
AGATCTCGTTTATAAAGCCATTATTGCACGTTACAGCCGTACCTTAGCGACAACATTTGCAGCAGGTGTTCCACTGATTG
ATGCACTAGAATCCACTGCGGGTGCAACCAACAATGTCGTTTACGAAGAAGCAGTAATGAAAATTCGTGAAGATGTGGCC
ACAGGTCAACAACTGCAATTTGCCATGCGTGTTTCCAATCGCTTTCCATCCATGGCGATTCAAATGGTTGCAATTGGTGA
AGAATCAGGTGCGCTAGACAGTATGCTGGATAAAGTCGCGACTCATTATGAAAATGAAGTGGACAATGCCGTAGATGGAT
TAACGTCTATGATGGAACCCCTTATTATGGCAATTCTTGGTGTTTTAGTCGGTGGTCTAGTGATTGCCATGTACTTACCA
ATCTTCCAAATGGGTTCTGTGGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

92.647

100

0.926
  pilC Acinetobacter baylyi ADP1

85.049

100

0.85
  pilC Pseudomonas stutzeri DSM 10701

60.934

99.755

0.608
  pilC Legionella pneumophila strain ERS1305867

53.58

99.265

0.532
  pilG Neisseria meningitidis 44/76-A

46.482

97.549

0.453
  pilG Neisseria gonorrhoeae MS11

46.482

97.549

0.453
  pilC Vibrio cholerae strain A1552

42.26

99.755

0.422
  pilC Vibrio campbellii strain DS40M4

40.587

100

0.407
  pilC Thermus thermophilus HB27

36.658

98.284

0.36

Multiple sequence alignment