Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   FPL17_RS12445 Genome accession   NZ_CP041970
Coordinates   2715386..2716246 (+) Length   286 a.a.
NCBI ID   WP_159885338.1    Uniprot ID   -
Organism   Acinetobacter dispersus strain NCCP 16014     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2710386..2721246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL17_RS12425 (FPL17_12570) secG 2710909..2711238 (-) 330 WP_078197608.1 preprotein translocase subunit SecG -
  FPL17_RS12430 (FPL17_12575) tpiA 2711251..2712042 (-) 792 WP_032864570.1 triose-phosphate isomerase -
  FPL17_RS12435 (FPL17_12580) pilB 2712417..2714129 (+) 1713 WP_159885336.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FPL17_RS12440 (FPL17_12585) pilC 2714154..2715380 (+) 1227 WP_078197602.1 type II secretion system F family protein Machinery gene
  FPL17_RS12445 (FPL17_12590) pilD 2715386..2716246 (+) 861 WP_159885338.1 prepilin peptidase Machinery gene
  FPL17_RS12450 (FPL17_12595) coaE 2716248..2716853 (+) 606 WP_159885340.1 dephospho-CoA kinase -
  FPL17_RS12455 (FPL17_12600) - 2716850..2717761 (-) 912 WP_159885342.1 DMT family transporter -
  FPL17_RS12460 (FPL17_12605) rlmB 2717792..2718541 (-) 750 WP_005191946.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  FPL17_RS12465 (FPL17_12610) - 2718710..2719036 (-) 327 WP_004802302.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 31985.33 Da        Isoelectric Point: 6.8227

>NTDB_id=375081 FPL17_RS12445 WP_159885338.1 2715386..2716246(+) (pilD) [Acinetobacter dispersus strain NCCP 16014]
MQQFLSYFIDNPAALYLAVGLFSLCIGSFLNVVIFRTPRMMEQEWQQECQMLLHPEQPIIDQSKLTLSQPASTCPKCDSP
IRWYQNIPVISWLVLRGKCGTCQNPISIRYPFIELLTMLCSLVVVAVFGTTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINSYAIYTTATAAIWGYLIGFLCLWIVYYIFKLVTGKEGMGYGDFKLLAALGAWMGPMLLPLIVLLSSM
VGAIIGIILMKMRGENQPFAFGPYIAIAGWIAFLWGDQIMKVYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=375081 FPL17_RS12445 WP_159885338.1 2715386..2716246(+) (pilD) [Acinetobacter dispersus strain NCCP 16014]
ATGCAACAATTCCTTTCTTATTTTATTGATAACCCAGCCGCCCTTTATCTTGCGGTTGGGCTTTTTAGTTTATGCATCGG
CAGTTTTTTAAATGTTGTTATTTTCCGCACCCCTCGCATGATGGAACAGGAATGGCAGCAAGAATGTCAAATGTTGTTAC
ACCCAGAACAACCCATTATTGATCAGAGTAAACTGACCTTAAGCCAACCAGCCTCAACCTGTCCAAAATGTGATTCGCCT
ATCCGTTGGTATCAAAATATCCCCGTGATTAGCTGGTTAGTACTGCGTGGTAAATGTGGGACTTGTCAAAATCCAATTAG
TATCCGCTATCCATTCATTGAACTGTTGACCATGCTCTGCTCTTTGGTTGTTGTTGCCGTATTCGGTACTACCATACAAA
TGCTATTTGGTTTAGTCCTCACGTGGGTATTGATTGCATTAACGTTTATTGATTTTGATACTCAACTACTGCCAGACCGC
TTTACCTTACCCTTAGCTGCTTTAGGCCTCGGTATTAATAGCTATGCGATTTACACGACAGCGACCGCCGCAATTTGGGG
TTATCTCATTGGTTTCCTGTGCCTCTGGATTGTTTACTACATCTTTAAACTAGTAACAGGCAAAGAAGGTATGGGTTATG
GTGATTTCAAGCTCTTAGCCGCACTCGGAGCATGGATGGGTCCAATGCTGTTGCCTTTAATTGTGCTGCTCTCTTCTATG
GTCGGTGCAATTATTGGTATTATTTTGATGAAAATGCGTGGTGAAAACCAGCCATTCGCATTTGGCCCTTATATCGCAAT
TGCAGGTTGGATTGCTTTTTTATGGGGTGATCAAATTATGAAAGTCTATTTAGGTGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

83.916

100

0.839
  pilD Acinetobacter baumannii D1279779

83.217

100

0.832
  pilD Vibrio cholerae strain A1552

54.478

93.706

0.51
  pilD Vibrio campbellii strain DS40M4

52.06

93.357

0.486
  pilD Neisseria gonorrhoeae MS11

46.52

95.455

0.444

Multiple sequence alignment