Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FNU76_RS08225 Genome accession   NZ_CP041730
Coordinates   1842244..1843467 (+) Length   407 a.a.
NCBI ID   WP_144277749.1    Uniprot ID   A0A516SE12
Organism   Chitinimonas arctica strain R3-44     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1837244..1848467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNU76_RS08205 (FNU76_08205) rpsP 1837364..1837606 (-) 243 WP_144277745.1 30S ribosomal protein S16 -
  FNU76_RS08210 (FNU76_08210) ffh 1837697..1839046 (-) 1350 WP_144277746.1 signal recognition particle protein -
  FNU76_RS08215 (FNU76_08215) - 1839137..1839955 (+) 819 WP_144277747.1 inner membrane protein YpjD -
  FNU76_RS08220 (FNU76_08220) pilF 1840506..1842218 (+) 1713 WP_144277748.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FNU76_RS08225 (FNU76_08225) pilC 1842244..1843467 (+) 1224 WP_144277749.1 type II secretion system F family protein Machinery gene
  FNU76_RS08230 (FNU76_08230) pilD 1843472..1844344 (+) 873 WP_144277750.1 A24 family peptidase Machinery gene
  FNU76_RS08235 (FNU76_08235) coaE 1844416..1845018 (+) 603 WP_144277751.1 dephospho-CoA kinase -
  FNU76_RS08240 (FNU76_08240) zapD 1845106..1845864 (+) 759 WP_144277752.1 cell division protein ZapD -
  FNU76_RS08245 (FNU76_08245) - 1845864..1846052 (+) 189 WP_144277753.1 DNA gyrase inhibitor YacG -
  FNU76_RS08250 (FNU76_08250) - 1846145..1846903 (+) 759 WP_144277754.1 GNAT family N-acetyltransferase -
  FNU76_RS08255 (FNU76_08255) - 1847019..1847837 (+) 819 WP_144277755.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44534.44 Da        Isoelectric Point: 9.7791

>NTDB_id=373595 FNU76_RS08225 WP_144277749.1 1842244..1843467(+) (pilC) [Chitinimonas arctica strain R3-44]
MAVDKKSQVKEQTFSWEGKDRTGKTLKGEMRAVGDAVVRSNLRRQGITVFKIKKQSRSRGKKITEKDITFFTRQMAVMMK
SGVPLLQAFDIVAKGHANPSVSRLLYDIKNDVETGSSLTQAFRKHPLYFDQLFCNLVQAGEQAGILDALLDRLATYKEKI
LAIKGKIKSALFYPTAIVVAAFIVISVIMIFVIPAFKDLFSGFGADLPGPTQFVIDVSEIFLGYWWAIFGAIGGGIYGIL
ELKKRSIPFQHLIDRTLLRLPILGEIMRKATIARWTRTMSTMFAAGVPLVEALDSVGGAAGNIIYSDATKRIQNEVSTGT
SLTVAMQNTEVFPSMVLQMVAIGEESGALDAMLGKIADFFEQEVDEAVEALTSLMEPLIMMVLGPIIGGIIIAMYLPIFK
MGAAVGG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=373595 FNU76_RS08225 WP_144277749.1 1842244..1843467(+) (pilC) [Chitinimonas arctica strain R3-44]
ATGGCGGTGGACAAAAAATCCCAGGTAAAGGAACAGACGTTTTCCTGGGAAGGCAAGGACAGGACCGGCAAGACGCTCAA
GGGCGAAATGCGCGCCGTGGGCGATGCGGTGGTGCGCTCCAATTTGCGCCGGCAAGGCATAACCGTCTTCAAGATCAAGA
AACAGTCGCGCTCGCGCGGCAAGAAGATCACGGAAAAGGACATCACCTTCTTCACCCGCCAGATGGCCGTGATGATGAAG
TCGGGCGTCCCCCTGCTGCAGGCATTCGACATCGTCGCCAAAGGCCACGCCAACCCCAGCGTCTCCCGCCTCTTGTACGA
TATCAAGAACGATGTGGAAACCGGCTCCAGCTTGACGCAGGCATTCCGCAAGCACCCGCTGTATTTCGACCAGCTGTTCT
GCAATCTGGTACAGGCCGGTGAGCAGGCCGGTATTCTGGATGCCCTGCTCGACCGCTTGGCAACCTATAAGGAAAAGATC
CTGGCCATCAAGGGCAAGATCAAATCCGCGCTGTTCTATCCGACGGCGATTGTCGTGGCGGCCTTTATCGTGATCTCCGT
GATCATGATTTTCGTGATTCCCGCCTTCAAGGACCTGTTCTCCGGTTTCGGCGCGGATCTACCCGGCCCGACCCAATTCG
TGATCGACGTATCCGAAATCTTCCTGGGTTACTGGTGGGCCATTTTCGGCGCCATCGGTGGCGGGATATACGGCATCCTG
GAACTGAAGAAGCGTTCGATTCCCTTCCAGCACCTGATCGACCGAACCCTGCTGAGGCTACCCATCCTGGGTGAAATCAT
GCGCAAGGCCACGATCGCGCGCTGGACCCGTACCATGTCCACCATGTTCGCCGCCGGCGTACCGCTGGTGGAGGCATTGG
ATTCGGTGGGCGGCGCCGCCGGCAACATCATCTATTCCGACGCCACCAAGCGGATTCAAAATGAAGTCAGCACCGGTACC
AGCTTGACCGTGGCCATGCAGAACACCGAGGTATTTCCCTCCATGGTGCTGCAGATGGTCGCCATCGGCGAAGAATCCGG
CGCGCTGGATGCCATGCTGGGCAAGATCGCCGACTTTTTCGAACAGGAAGTGGATGAGGCGGTCGAGGCACTGACCAGCC
TGATGGAACCGCTGATCATGATGGTGCTCGGCCCTATCATCGGCGGCATCATCATCGCCATGTACCTGCCGATCTTCAAG
ATGGGTGCAGCGGTCGGTGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A516SE12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.904

97.543

0.526
  pilC Acinetobacter baumannii D1279779

50.976

100

0.514
  pilC Pseudomonas stutzeri DSM 10701

51.75

98.28

0.509
  pilC Acinetobacter baylyi ADP1

50.739

99.754

0.506
  pilG Neisseria gonorrhoeae MS11

51.256

97.789

0.501
  pilG Neisseria meningitidis 44/76-A

50.754

97.789

0.496
  pilC Vibrio campbellii strain DS40M4

39.506

99.509

0.393
  pilC Vibrio cholerae strain A1552

39.85

98.034

0.391
  pilC Thermus thermophilus HB27

36.145

100

0.369

Multiple sequence alignment