Detailed information NTG0373596

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FNU76_RS08230
• Genome accession: NZ_CP041730
• Coordinates: 1843472..1844344 (+)
• Length: 290 a.a.
• NCBI ID: WP_144277750.1
• Uniprot ID: A0A516SDX4
• Organism: Chitinimonas arctica strain R3-44
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1838472..1849344

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FNU76_RS08215 (FNU76_08215)	-	1839137..1839955 (+)	819	WP_144277747.1	inner membrane protein YpjD	-
FNU76_RS08220 (FNU76_08220)	pilF	1840506..1842218 (+)	1713	WP_144277748.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FNU76_RS08225 (FNU76_08225)	pilC	1842244..1843467 (+)	1224	WP_144277749.1	type II secretion system F family protein	Machinery gene
FNU76_RS08230 (FNU76_08230)	pilD	1843472..1844344 (+)	873	WP_144277750.1	A24 family peptidase	Machinery gene
FNU76_RS08235 (FNU76_08235)	coaE	1844416..1845018 (+)	603	WP_144277751.1	dephospho-CoA kinase	-
FNU76_RS08240 (FNU76_08240)	zapD	1845106..1845864 (+)	759	WP_144277752.1	cell division protein ZapD	-
FNU76_RS08245 (FNU76_08245)	-	1845864..1846052 (+)	189	WP_144277753.1	DNA gyrase inhibitor YacG	-
FNU76_RS08250 (FNU76_08250)	-	1846145..1846903 (+)	759	WP_144277754.1	GNAT family N-acetyltransferase	-
FNU76_RS08255 (FNU76_08255)	-	1847019..1847837 (+)	819	WP_144277755.1	1-acyl-sn-glycerol-3-phosphate acyltransferase	-
FNU76_RS08260 (FNU76_08260)	-	1847770..1848594 (-)	825	WP_144277756.1	symmetrical bis(5'-nucleosyl)-tetraphosphatase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31514.74 Da
• Isoelectric Point: 7.9742

>NTDB_id=373596 FNU76_RS08230 WP_144277750.1 1843472..1844344(+) (pilD) [Chitinimonas arctica strain R3-44]
MSLLEALAAFPALFILASLMFGLLVGSFLNVAIHRLPKMMETEFRHECAIIDLPIETEPPARPVYNLVKPRSACPGCGRQ
IAGYDNIPVLSWLVLRGRCRHCKTAISVRYPVVELATGLISAGLAWHFGWGPAAFGAIVFSWVLMALFWIDVDTYLLPDS
LTLPLLWLGLLINLDATFVPLSHAVVGAAAGYLCLWLVYWLFKLTTGKEGMGYGDFKLLAAIGAWLGWQALPIVILLSSL
VGAVIGIALHLLANRGWSKPLPFGPYLAMAGLIALIWGPALNQLIWAGAL

Nucleotide

• Length: 873 bp

>NTDB_id=373596 FNU76_RS08230 WP_144277750.1 1843472..1844344(+) (pilD) [Chitinimonas arctica strain R3-44]
ATGTCGCTTTTGGAGGCCTTGGCTGCTTTTCCGGCGTTGTTTATCCTTGCGTCCTTGATGTTTGGCTTGCTGGTCGGCAG
TTTTCTCAATGTCGCTATCCATCGCCTACCCAAGATGATGGAAACGGAATTCCGGCACGAATGCGCCATCATCGATCTGC
CGATCGAGACGGAGCCGCCGGCGCGGCCCGTCTACAACCTGGTCAAGCCGCGCTCGGCCTGTCCAGGCTGCGGACGGCAG
ATCGCCGGCTACGACAATATCCCGGTACTGTCCTGGCTTGTTCTGCGCGGCCGCTGCCGGCATTGCAAGACAGCCATTTC
GGTCCGCTACCCCGTCGTCGAATTGGCTACCGGCCTGATTTCCGCCGGCCTGGCCTGGCATTTCGGCTGGGGCCCCGCCG
CCTTCGGCGCCATCGTGTTCAGCTGGGTCCTGATGGCGCTGTTCTGGATCGATGTCGATACCTACCTGCTGCCGGACAGC
CTGACGTTACCCTTGCTATGGCTGGGTTTGCTAATCAACCTGGATGCCACCTTCGTCCCCTTGAGCCATGCCGTGGTTGG
CGCCGCCGCCGGCTACCTCTGCCTCTGGCTGGTATATTGGCTATTCAAGCTGACCACCGGCAAGGAAGGCATGGGGTATG
GCGACTTTAAACTACTGGCGGCCATCGGCGCATGGCTGGGCTGGCAAGCCCTGCCCATCGTCATCCTGCTGTCCTCGCTC
GTCGGCGCGGTGATCGGCATCGCCCTGCATTTGCTGGCCAACCGTGGTTGGAGCAAGCCGCTGCCTTTCGGCCCCTATCT
GGCCATGGCCGGGCTGATCGCCCTGATCTGGGGGCCGGCACTGAACCAGCTGATCTGGGCCGGCGCGCTCTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A516SDX4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.797	95.172	0.531
pilD	Vibrio campbellii strain DS40M4	54.348	95.172	0.517
pilD	Acinetobacter baumannii D1279779	50.181	95.517	0.479
pilD	Acinetobacter nosocomialis M2	49.458	95.517	0.472
pilD	Neisseria gonorrhoeae MS11	50.195	88.621	0.445