Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | FO456_RS07500 | Genome accession | NZ_CP041724 |
| Coordinates | 1571413..1571727 (+) | Length | 104 a.a. |
| NCBI ID | WP_070648481.1 | Uniprot ID | - |
| Organism | Staphylococcus lugdunensis strain SL55 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1566413..1576727
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FO456_RS07470 (FO456_07475) | - | 1567209..1567412 (+) | 204 | WP_070648475.1 | YqgQ family protein | - |
| FO456_RS07475 (FO456_07480) | - | 1567409..1568395 (+) | 987 | WP_070648477.1 | ROK family glucokinase | - |
| FO456_RS07480 (FO456_07485) | - | 1568395..1568718 (+) | 324 | WP_002459012.1 | MTH1187 family thiamine-binding protein | - |
| FO456_RS07485 (FO456_07490) | - | 1568722..1569345 (+) | 624 | WP_002459013.1 | MBL fold metallo-hydrolase | - |
| FO456_RS07490 (FO456_07495) | comGA | 1569392..1570366 (+) | 975 | WP_002478129.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| FO456_RS12995 (FO456_07500) | comGB | 1570338..1571398 (+) | 1061 | Protein_1417 | competence type IV pilus assembly protein ComGB | - |
| FO456_RS07500 (FO456_07505) | comGC | 1571413..1571727 (+) | 315 | WP_070648481.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| FO456_RS07505 (FO456_07510) | comGD | 1571660..1572154 (+) | 495 | WP_225306455.1 | competence type IV pilus minor pilin ComGD | - |
| FO456_RS07510 (FO456_07515) | - | 1572141..1572434 (+) | 294 | WP_070648483.1 | hypothetical protein | - |
| FO456_RS07515 (FO456_07520) | - | 1572496..1572855 (+) | 360 | WP_002459019.1 | competence type IV pilus minor pilin ComGF | - |
| FO456_RS07525 (FO456_07530) | - | 1573009..1573527 (+) | 519 | WP_002459021.1 | shikimate kinase | - |
| FO456_RS07530 (FO456_07535) | gcvT | 1573697..1574788 (+) | 1092 | WP_037544364.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| FO456_RS07535 (FO456_07540) | gcvPA | 1574805..1576154 (+) | 1350 | WP_002478134.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 104 a.a. Molecular weight: 11399.40 Da Isoelectric Point: 8.2579
>NTDB_id=373460 FO456_RS07500 WP_070648481.1 1571413..1571727(+) (comGC) [Staphylococcus lugdunensis strain SL55]
MKFSFYKKCKAFTLIEMLLVLLIISVLLILIIPNIAKQTAYVQSTGCEAQVKMVNSQIEAYTLKHNGSPKSIDDLISEGF
IKDGQKNCKSGETISISNGEAVAN
MKFSFYKKCKAFTLIEMLLVLLIISVLLILIIPNIAKQTAYVQSTGCEAQVKMVNSQIEAYTLKHNGSPKSIDDLISEGF
IKDGQKNCKSGETISISNGEAVAN
Nucleotide
Download Length: 315 bp
>NTDB_id=373460 FO456_RS07500 WP_070648481.1 1571413..1571727(+) (comGC) [Staphylococcus lugdunensis strain SL55]
ATGAAATTTTCTTTTTATAAAAAATGCAAAGCGTTTACACTAATAGAAATGTTATTAGTATTACTAATTATTAGTGTCTT
GCTTATCTTAATTATTCCAAACATTGCCAAACAAACAGCATATGTACAATCAACAGGTTGTGAAGCACAAGTAAAGATGG
TCAATAGCCAAATAGAAGCCTATACTCTAAAGCATAATGGATCTCCAAAAAGCATTGATGATTTAATTTCTGAGGGTTTT
ATTAAAGATGGTCAAAAGAATTGCAAATCTGGGGAAACCATCAGCATATCAAATGGTGAGGCAGTTGCAAATTAA
ATGAAATTTTCTTTTTATAAAAAATGCAAAGCGTTTACACTAATAGAAATGTTATTAGTATTACTAATTATTAGTGTCTT
GCTTATCTTAATTATTCCAAACATTGCCAAACAAACAGCATATGTACAATCAACAGGTTGTGAAGCACAAGTAAAGATGG
TCAATAGCCAAATAGAAGCCTATACTCTAAAGCATAATGGATCTCCAAAAAGCATTGATGATTTAATTTCTGAGGGTTTT
ATTAAAGATGGTCAAAAGAATTGCAAATCTGGGGAAACCATCAGCATATCAAATGGTGAGGCAGTTGCAAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
81.373 |
98.077 |
0.798 |
| comGC | Staphylococcus aureus N315 |
81.373 |
98.077 |
0.798 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
45.918 |
94.231 |
0.433 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
44.554 |
97.115 |
0.433 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
46.154 |
87.5 |
0.404 |
| comGC/cglC | Streptococcus pneumoniae R6 |
48.235 |
81.731 |
0.394 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
48.235 |
81.731 |
0.394 |
| comGC/cglC | Streptococcus pneumoniae D39 |
48.235 |
81.731 |
0.394 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
50.633 |
75.962 |
0.385 |
| comGC/cglC | Streptococcus mitis SK321 |
51.282 |
75 |
0.385 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
51.282 |
75 |
0.385 |
| comYC | Streptococcus mutans UA140 |
48.75 |
76.923 |
0.375 |
| comYC | Streptococcus mutans UA159 |
48.75 |
76.923 |
0.375 |