Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | FO456_RS07490 | Genome accession | NZ_CP041724 |
| Coordinates | 1569392..1570366 (+) | Length | 324 a.a. |
| NCBI ID | WP_002478129.1 | Uniprot ID | - |
| Organism | Staphylococcus lugdunensis strain SL55 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1564392..1575366
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FO456_RS07455 (FO456_07460) | rpmG | 1564816..1564965 (+) | 150 | WP_001830957.1 | 50S ribosomal protein L33 | - |
| FO456_RS07460 (FO456_07465) | - | 1565215..1565751 (+) | 537 | WP_002459008.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| FO456_RS07465 (FO456_07470) | - | 1565768..1567225 (+) | 1458 | WP_002478127.1 | rhomboid family intramembrane serine protease | - |
| FO456_RS07470 (FO456_07475) | - | 1567209..1567412 (+) | 204 | WP_070648475.1 | YqgQ family protein | - |
| FO456_RS07475 (FO456_07480) | - | 1567409..1568395 (+) | 987 | WP_070648477.1 | ROK family glucokinase | - |
| FO456_RS07480 (FO456_07485) | - | 1568395..1568718 (+) | 324 | WP_002459012.1 | MTH1187 family thiamine-binding protein | - |
| FO456_RS07485 (FO456_07490) | - | 1568722..1569345 (+) | 624 | WP_002459013.1 | MBL fold metallo-hydrolase | - |
| FO456_RS07490 (FO456_07495) | comGA | 1569392..1570366 (+) | 975 | WP_002478129.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| FO456_RS12995 (FO456_07500) | comGB | 1570338..1571398 (+) | 1061 | Protein_1417 | competence type IV pilus assembly protein ComGB | - |
| FO456_RS07500 (FO456_07505) | comGC | 1571413..1571727 (+) | 315 | WP_070648481.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| FO456_RS07505 (FO456_07510) | comGD | 1571660..1572154 (+) | 495 | WP_225306455.1 | competence type IV pilus minor pilin ComGD | - |
| FO456_RS07510 (FO456_07515) | - | 1572141..1572434 (+) | 294 | WP_070648483.1 | hypothetical protein | - |
| FO456_RS07515 (FO456_07520) | - | 1572496..1572855 (+) | 360 | WP_002459019.1 | competence type IV pilus minor pilin ComGF | - |
| FO456_RS07525 (FO456_07530) | - | 1573009..1573527 (+) | 519 | WP_002459021.1 | shikimate kinase | - |
| FO456_RS07530 (FO456_07535) | gcvT | 1573697..1574788 (+) | 1092 | WP_037544364.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 36932.76 Da Isoelectric Point: 7.8896
>NTDB_id=373459 FO456_RS07490 WP_002478129.1 1569392..1570366(+) (comGA) [Staphylococcus lugdunensis strain SL55]
MKILFKEIVNKAIQQNASDIHFIPSQTTVIIKFRVNDQLVDYEELNLSIYTKLLTFMKFQAGLDVSTHQIAQSGRYTYQY
KQQYYLRISTLPLSLGTESCVIRIVPQYFQQHKTCYQFNDFKQFMNKKQGLLLFSGPTGSGKSTLMYQMVLYAQQELNLN
VITIEDPVEQLISGITQVSVNDKAGINYVSTFKAILRCDPDVILIGEIRDASIAKCVIQASLSGHLVLSTIHANNCKGTL
LRLLEMGISVQEICQSINLISNQRLITTLNQQRALVCEMMINHQIEYFFEHNHTLPKSFHHLSQLIGNMSKEGVICEETA
NKYT
MKILFKEIVNKAIQQNASDIHFIPSQTTVIIKFRVNDQLVDYEELNLSIYTKLLTFMKFQAGLDVSTHQIAQSGRYTYQY
KQQYYLRISTLPLSLGTESCVIRIVPQYFQQHKTCYQFNDFKQFMNKKQGLLLFSGPTGSGKSTLMYQMVLYAQQELNLN
VITIEDPVEQLISGITQVSVNDKAGINYVSTFKAILRCDPDVILIGEIRDASIAKCVIQASLSGHLVLSTIHANNCKGTL
LRLLEMGISVQEICQSINLISNQRLITTLNQQRALVCEMMINHQIEYFFEHNHTLPKSFHHLSQLIGNMSKEGVICEETA
NKYT
Nucleotide
Download Length: 975 bp
>NTDB_id=373459 FO456_RS07490 WP_002478129.1 1569392..1570366(+) (comGA) [Staphylococcus lugdunensis strain SL55]
ATGAAAATATTATTTAAGGAAATTGTTAACAAAGCGATACAACAGAATGCAAGTGATATTCACTTTATTCCAAGTCAAAC
TACTGTCATCATTAAATTTCGTGTTAATGACCAACTTGTAGATTATGAAGAATTAAATTTAAGCATCTATACTAAACTGT
TAACGTTTATGAAATTTCAAGCTGGCTTAGATGTATCAACACATCAAATCGCCCAAAGTGGAAGATATACCTATCAATAT
AAGCAACAATATTACTTAAGAATCTCAACTTTACCACTATCATTAGGTACAGAAAGTTGCGTCATTCGTATCGTACCACA
ATACTTTCAACAACATAAAACGTGTTACCAATTTAATGATTTCAAACAGTTTATGAATAAAAAGCAAGGATTGTTATTAT
TTAGTGGTCCAACTGGATCTGGTAAAAGTACACTGATGTATCAAATGGTTTTATATGCACAACAAGAGCTTAATTTAAAT
GTTATTACAATTGAAGATCCAGTTGAACAGTTGATATCAGGCATTACACAAGTATCTGTAAATGATAAAGCAGGCATTAA
TTATGTATCAACATTTAAAGCTATTCTGCGCTGTGATCCTGATGTTATCTTAATTGGCGAAATTAGAGATGCCAGTATCG
CAAAATGTGTTATTCAGGCAAGTTTAAGTGGCCATTTAGTATTATCTACAATTCACGCAAACAACTGCAAAGGAACTTTA
TTAAGATTATTAGAAATGGGAATTTCAGTTCAAGAAATATGTCAATCAATTAATTTAATCTCTAATCAAAGACTCATTAC
CACCCTAAATCAACAACGAGCATTGGTTTGCGAAATGATGATAAATCATCAAATAGAATACTTTTTTGAACATAATCATA
CCTTGCCTAAATCATTTCATCATTTATCACAGTTAATTGGTAACATGTCAAAAGAAGGGGTCATTTGTGAAGAAACTGCT
AATAAATATACTTAA
ATGAAAATATTATTTAAGGAAATTGTTAACAAAGCGATACAACAGAATGCAAGTGATATTCACTTTATTCCAAGTCAAAC
TACTGTCATCATTAAATTTCGTGTTAATGACCAACTTGTAGATTATGAAGAATTAAATTTAAGCATCTATACTAAACTGT
TAACGTTTATGAAATTTCAAGCTGGCTTAGATGTATCAACACATCAAATCGCCCAAAGTGGAAGATATACCTATCAATAT
AAGCAACAATATTACTTAAGAATCTCAACTTTACCACTATCATTAGGTACAGAAAGTTGCGTCATTCGTATCGTACCACA
ATACTTTCAACAACATAAAACGTGTTACCAATTTAATGATTTCAAACAGTTTATGAATAAAAAGCAAGGATTGTTATTAT
TTAGTGGTCCAACTGGATCTGGTAAAAGTACACTGATGTATCAAATGGTTTTATATGCACAACAAGAGCTTAATTTAAAT
GTTATTACAATTGAAGATCCAGTTGAACAGTTGATATCAGGCATTACACAAGTATCTGTAAATGATAAAGCAGGCATTAA
TTATGTATCAACATTTAAAGCTATTCTGCGCTGTGATCCTGATGTTATCTTAATTGGCGAAATTAGAGATGCCAGTATCG
CAAAATGTGTTATTCAGGCAAGTTTAAGTGGCCATTTAGTATTATCTACAATTCACGCAAACAACTGCAAAGGAACTTTA
TTAAGATTATTAGAAATGGGAATTTCAGTTCAAGAAATATGTCAATCAATTAATTTAATCTCTAATCAAAGACTCATTAC
CACCCTAAATCAACAACGAGCATTGGTTTGCGAAATGATGATAAATCATCAAATAGAATACTTTTTTGAACATAATCATA
CCTTGCCTAAATCATTTCATCATTTATCACAGTTAATTGGTAACATGTCAAAAGAAGGGGTCATTTGTGAAGAAACTGCT
AATAAATATACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
71.207 |
99.691 |
0.71 |
| comGA | Staphylococcus aureus N315 |
71.207 |
99.691 |
0.71 |