Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   VV7356_RS20235 Genome accession   NZ_CP041683
Coordinates   4522696..4523922 (+) Length   408 a.a.
NCBI ID   WP_017789875.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 7356     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4517696..4528922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV7356_RS20215 (VV7356_20795) ampD 4518718..4519290 (-) 573 WP_017789879.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  VV7356_RS20220 (VV7356_20800) nadC 4519383..4520270 (+) 888 WP_017789878.1 carboxylating nicotinate-nucleotide diphosphorylase -
  VV7356_RS20225 (VV7356_20805) pilA 4520493..4520960 (+) 468 WP_017789877.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  VV7356_RS20230 (VV7356_20810) pilB 4520960..4522648 (+) 1689 WP_017789876.1 type IV-A pilus assembly ATPase PilB Machinery gene
  VV7356_RS20235 (VV7356_20815) pilC 4522696..4523922 (+) 1227 WP_017789875.1 type II secretion system F family protein Machinery gene
  VV7356_RS20240 (VV7356_20820) pilD 4524016..4524885 (+) 870 WP_026130630.1 prepilin peptidase Machinery gene
  VV7356_RS20245 (VV7356_20825) coaE 4524887..4525495 (+) 609 WP_017789873.1 dephospho-CoA kinase -
  VV7356_RS20250 (VV7356_20830) zapD 4525528..4526268 (+) 741 WP_017789872.1 cell division protein ZapD -
  VV7356_RS20255 (VV7356_20835) yacG 4526331..4526525 (+) 195 WP_026060801.1 DNA gyrase inhibitor YacG -
  VV7356_RS20260 (VV7356_20840) rplS 4526742..4527095 (-) 354 WP_011079544.1 50S ribosomal protein L19 -
  VV7356_RS20265 (VV7356_20845) trmD 4527137..4527886 (-) 750 WP_011079543.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  VV7356_RS20270 (VV7356_20850) rimM 4527914..4528462 (-) 549 WP_011079542.1 ribosome maturation factor RimM -
  VV7356_RS20275 (VV7356_20855) rpsP 4528478..4528726 (-) 249 WP_011079541.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45263.56 Da        Isoelectric Point: 10.3681

>NTDB_id=373021 VV7356_RS20235 WP_017789875.1 4522696..4523922(+) (pilC) [Vibrio vulnificus strain 7356]
MKLKTHSQIKNYQWKGINGAGKKVSGNTLALTELEVRDKLKMQHIQIKKIKKSSVSVFTRLSHKVKGKDITLLTRQLATM
LTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSASPQFDGIYVDLVATGEQSGNLDQVFERLAFYRE
KNEQLRAKVIKALIYPCMVVLVALGVSYLMLTKVIPEFRKMFTGFGAELPWFTQKVLDLSDFVQAYSSWFFITLFSAIYL
LRGLSRKSPAFRLKLSRLSLKIPVIGGVLSKAAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAA
GMPMYIAMRNSLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVTAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=373021 VV7356_RS20235 WP_017789875.1 4522696..4523922(+) (pilC) [Vibrio vulnificus strain 7356]
ATGAAGCTTAAAACCCATTCACAAATCAAAAACTATCAATGGAAAGGGATTAACGGAGCTGGAAAAAAAGTTTCCGGCAA
CACGCTGGCGCTCACCGAGCTTGAAGTGCGTGATAAGCTGAAAATGCAGCATATCCAGATCAAAAAGATCAAAAAATCCA
GTGTGTCAGTTTTCACGAGGTTAAGCCATAAAGTCAAAGGCAAAGACATCACACTGCTTACCCGCCAACTCGCCACCATG
CTGACCACTGGTGTCCCTATTCTCCAATCACTTAAATTGGTTGCTGACAACCATCGCAAAGCTGAGATGAAGTCGATTTT
AGCCAATGTGAGCAAAGCCGTTGAAGCAGGCACGCCGTTATCGAAAGCGCTTCGCAGTGCCAGCCCACAATTCGATGGCA
TTTATGTTGACTTAGTCGCCACTGGTGAACAATCGGGTAATCTTGATCAAGTTTTTGAACGCCTCGCTTTTTATCGGGAA
AAAAATGAGCAGTTGCGAGCAAAAGTGATCAAGGCGCTGATTTATCCCTGCATGGTCGTGCTGGTCGCGTTGGGGGTCTC
TTATTTAATGCTGACCAAGGTTATTCCCGAGTTTCGCAAAATGTTCACCGGATTTGGCGCAGAACTGCCTTGGTTTACGC
AAAAAGTCTTAGACCTGTCTGATTTTGTGCAAGCCTACAGCAGTTGGTTTTTCATTACGTTGTTCAGTGCCATTTATTTA
CTGCGCGGTCTAAGTCGCAAGTCTCCCGCATTTCGGCTTAAACTCTCGCGACTAAGCTTGAAAATTCCAGTGATTGGTGG
GGTCTTATCCAAAGCTGCGATTGCCAAATTTAGCCGCACATTGGCCACCAGTTTCAGTGCAGGTATCCCGATCCTCACCA
GTTTAAAAACCACCAGTAAAACCGCTGGCAATCTGCATTACCAATATGCGATTGAAGATGTTTATCGTGACACCGCTGCA
GGGATGCCAATGTACATCGCCATGCGTAACAGCCTTGCTTTCCCAGAATTGGTACTGCAAATGGTGATGATTGGTGAAGA
ATCTGGCCAAATGGACGATATGCTCAACAAAATTGCCACCATCTATGAGTTTGAAGTGGATAACACCGTCGACAACCTCG
GTAAAATTCTCGAGCCGTTGATCATCGTCTTTCTGGGCGTTGTCGTCGGCGGATTGGTCACCGCAATGTACTTGCCGATC
TTTAATTTAATGAGTGTTCTGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

78.25

98.039

0.767
  pilC Vibrio campbellii strain DS40M4

74.813

98.284

0.735
  pilC Pseudomonas stutzeri DSM 10701

41.584

99.02

0.412
  pilC Acinetobacter baumannii D1279779

40

100

0.402
  pilG Neisseria gonorrhoeae MS11

40.796

98.529

0.402
  pilC Acinetobacter baylyi ADP1

40.852

97.794

0.4
  pilG Neisseria meningitidis 44/76-A

40.547

98.529

0.4
  pilC Legionella pneumophila strain ERS1305867

40.099

99.02

0.397

Multiple sequence alignment