Detailed information NTG0373022

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: VV7356_RS20240
• Genome accession: NZ_CP041683
• Coordinates: 4524016..4524885 (+)
• Length: 289 a.a.
• NCBI ID: WP_026130630.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain 7356
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4519016..4529885

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VV7356_RS20220 (VV7356_20800)	nadC	4519383..4520270 (+)	888	WP_017789878.1	carboxylating nicotinate-nucleotide diphosphorylase	-
VV7356_RS20225 (VV7356_20805)	pilA	4520493..4520960 (+)	468	WP_017789877.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
VV7356_RS20230 (VV7356_20810)	pilB	4520960..4522648 (+)	1689	WP_017789876.1	type IV-A pilus assembly ATPase PilB	Machinery gene
VV7356_RS20235 (VV7356_20815)	pilC	4522696..4523922 (+)	1227	WP_017789875.1	type II secretion system F family protein	Machinery gene
VV7356_RS20240 (VV7356_20820)	pilD	4524016..4524885 (+)	870	WP_026130630.1	prepilin peptidase	Machinery gene
VV7356_RS20245 (VV7356_20825)	coaE	4524887..4525495 (+)	609	WP_017789873.1	dephospho-CoA kinase	-
VV7356_RS20250 (VV7356_20830)	zapD	4525528..4526268 (+)	741	WP_017789872.1	cell division protein ZapD	-
VV7356_RS20255 (VV7356_20835)	yacG	4526331..4526525 (+)	195	WP_026060801.1	DNA gyrase inhibitor YacG	-
VV7356_RS20260 (VV7356_20840)	rplS	4526742..4527095 (-)	354	WP_011079544.1	50S ribosomal protein L19	-
VV7356_RS20265 (VV7356_20845)	trmD	4527137..4527886 (-)	750	WP_011079543.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
VV7356_RS20270 (VV7356_20850)	rimM	4527914..4528462 (-)	549	WP_011079542.1	ribosome maturation factor RimM	-
VV7356_RS20275 (VV7356_20855)	rpsP	4528478..4528726 (-)	249	WP_011079541.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32258.30 Da
• Isoelectric Point: 6.4630

>NTDB_id=373022 VV7356_RS20240 WP_026130630.1 4524016..4524885(+) (pilD) [Vibrio vulnificus strain 7356]
MDALQYYPWLYIGLASLFGLLVGSFLNVVIYRLPKIMEMEWRQECAESFPEYNITPPTENLTLSTPRSSCPSCHTPIRVR
DNIPVLSWLALRGKCHHCQTKISARYPFVEALSAFLCGLVAWKFGYAPITVALIGFTLVLIAATFIDLDTMLLPDQLTLP
LTWTGIALALLEISPVSLQDSVIGAMAGYLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQYLPMIILLSSVVGL
IFGLIQLRLQKQGIEMAFPFGPYLAIAGWVALMWGDSLMSWYLNYLIGA

Nucleotide

• Length: 870 bp

>NTDB_id=373022 VV7356_RS20240 WP_026130630.1 4524016..4524885(+) (pilD) [Vibrio vulnificus strain 7356]
ATGGACGCGTTACAATACTACCCTTGGCTTTATATTGGTTTAGCTTCCCTGTTTGGCTTACTGGTAGGCAGCTTTCTTAA
CGTCGTCATCTACCGTCTACCGAAAATAATGGAAATGGAGTGGCGCCAAGAGTGTGCAGAGTCCTTTCCTGAATACAACA
TCACACCGCCGACAGAAAACCTAACATTAAGCACGCCGCGTTCAAGTTGCCCTTCGTGCCATACACCAATACGAGTTCGA
GATAATATTCCTGTCTTGAGTTGGCTAGCTCTAAGAGGAAAATGTCACCATTGCCAGACGAAAATTAGTGCTCGCTATCC
TTTTGTTGAAGCACTGAGCGCCTTTTTGTGCGGCCTAGTCGCTTGGAAGTTCGGTTATGCACCGATTACCGTAGCACTGA
TTGGTTTTACTTTGGTGTTGATCGCCGCCACCTTCATCGACTTAGATACCATGCTACTGCCTGATCAGCTGACGCTGCCG
CTGACGTGGACAGGCATCGCGCTAGCGTTACTAGAGATAAGTCCAGTATCTCTGCAAGATTCAGTGATCGGCGCGATGGC
TGGCTATCTCTGCCTTTGGAGCGTTTATCACCTTTTCCGCTTGCTGACGGGAAAAGAAGGCATGGGTTACGGAGACTTTA
AATTGCTTGCGGCACTTGGAGCTTGGCTCGGCTGGCAATACCTACCGATGATCATCTTACTTTCTTCGGTTGTCGGGCTG
ATCTTTGGTCTCATTCAACTCAGATTGCAAAAGCAAGGCATTGAGATGGCTTTTCCATTTGGGCCTTATCTGGCCATTGC
TGGTTGGGTCGCCTTAATGTGGGGAGATAGCTTGATGTCTTGGTATCTCAACTATCTTATAGGGGCGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	77.083	99.654	0.768
pilD	Vibrio cholerae strain A1552	72.222	99.654	0.72
pilD	Acinetobacter nosocomialis M2	54.348	95.502	0.519
pilD	Acinetobacter baumannii D1279779	54.348	95.502	0.519
pilD	Neisseria gonorrhoeae MS11	47.636	95.156	0.453