Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   THERJR_RS14985 Genome accession   NC_014152
Coordinates   3119604..3120005 (-) Length   133 a.a.
NCBI ID   WP_013121795.1    Uniprot ID   -
Organism   Thermincola potens JR     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3114604..3125005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  THERJR_RS14960 (TherJR_2973) lonC 3115404..3117353 (-) 1950 WP_013121790.1 Lon family ATP-dependent protease -
  THERJR_RS14965 (TherJR_2974) rplI 3117389..3117832 (-) 444 WP_013121791.1 50S ribosomal protein L9 -
  THERJR_RS14970 (TherJR_2975) - 3117862..3118836 (-) 975 WP_013121792.1 YybS family protein -
  THERJR_RS14975 (TherJR_2976) - 3118843..3119160 (-) 318 WP_013121793.1 MazG-like family protein -
  THERJR_RS14980 (TherJR_2977) rpsR 3119352..3119582 (-) 231 WP_013121794.1 30S ribosomal protein S18 -
  THERJR_RS14985 (TherJR_2978) ssbA 3119604..3120005 (-) 402 WP_013121795.1 single-stranded DNA-binding protein Machinery gene
  THERJR_RS14990 (TherJR_2979) rpsF 3120042..3120329 (-) 288 WP_013121796.1 30S ribosomal protein S6 -
  THERJR_RS14995 (TherJR_2980) ychF 3120472..3121566 (-) 1095 WP_013121797.1 redox-regulated ATPase YchF -
  THERJR_RS15000 (TherJR_2981) - 3121639..3121842 (-) 204 WP_013121798.1 DUF951 domain-containing protein -
  THERJR_RS15005 (TherJR_2982) - 3121867..3122772 (-) 906 WP_013121799.1 mechanosensitive ion channel family protein -
  THERJR_RS15010 (TherJR_2983) - 3122783..3123697 (-) 915 WP_013121800.1 HEAT repeat domain-containing protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14695.50 Da        Isoelectric Point: 4.7306

>NTDB_id=37243 THERJR_RS14985 WP_013121795.1 3119604..3120005(-) (ssbA) [Thermincola potens JR]
MLNRIILIGRLTKDPELRYTPNGRAVAGFTLAVDRPFKNQQGERETDFINIVVWGAQAENCANYLSKGKLAAVDGRLQIR
SFEGQDGQRRWVTEVVADTVRFLSPKSGSEPASFGGAEDMGISVDFSDDDIPF

Nucleotide


Download         Length: 402 bp        

>NTDB_id=37243 THERJR_RS14985 WP_013121795.1 3119604..3120005(-) (ssbA) [Thermincola potens JR]
ATGTTAAACAGGATCATCCTGATTGGCCGGTTAACTAAAGATCCGGAACTGCGGTACACACCTAACGGTAGAGCTGTTGC
CGGCTTTACCCTTGCTGTTGACAGGCCTTTTAAAAATCAGCAGGGAGAGCGGGAGACAGACTTTATTAACATAGTTGTTT
GGGGAGCGCAAGCCGAGAATTGCGCTAACTATTTATCAAAAGGTAAACTGGCTGCTGTCGACGGAAGGTTGCAGATTCGT
TCCTTTGAAGGGCAGGACGGACAGCGCCGCTGGGTTACGGAAGTAGTAGCCGATACGGTTCGTTTCTTGAGCCCCAAAAG
CGGCAGTGAGCCGGCTTCCTTTGGTGGAGCTGAAGACATGGGTATTTCTGTCGACTTTTCCGATGACGATATACCTTTCT
AG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.093

80.451

0.564
  ssb Latilactobacillus sakei subsp. sakei 23K

41.176

100

0.526
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

79.699

0.451
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.857

100

0.429
  ssbB/cilA Streptococcus mitis NCTC 12261

42.105

100

0.421
  ssbB/cilA Streptococcus pneumoniae R6

42.105

100

0.421
  ssbB/cilA Streptococcus mitis SK321

42.105

100

0.421
  ssbB/cilA Streptococcus pneumoniae Rx1

42.105

100

0.421
  ssbB/cilA Streptococcus pneumoniae D39

42.105

100

0.421
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.353

100

0.414
  ssbA Streptococcus mutans UA159

39.85

100

0.399

Multiple sequence alignment