Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FLM48_RS20150 Genome accession   NZ_CP041329
Coordinates   4578622..4579881 (+) Length   419 a.a.
NCBI ID   WP_179025910.1    Uniprot ID   -
Organism   Shewanella sp. Scap07     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4573622..4584881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLM48_RS20135 (FLM48_20280) nadC 4574472..4575356 (+) 885 WP_028773322.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FLM48_RS20140 (FLM48_20285) - 4576365..4576766 (+) 402 WP_179026445.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FLM48_RS20145 (FLM48_20290) pilB 4576854..4578560 (+) 1707 WP_179025909.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FLM48_RS20150 (FLM48_20295) pilC 4578622..4579881 (+) 1260 WP_179025910.1 type II secretion system F family protein Machinery gene
  FLM48_RS20155 (FLM48_20300) pilD 4579965..4580888 (+) 924 WP_179025911.1 A24 family peptidase Machinery gene
  FLM48_RS20160 (FLM48_20305) coaE 4580898..4581506 (+) 609 WP_179025912.1 dephospho-CoA kinase -
  FLM48_RS20165 (FLM48_20310) zapD 4581508..4582242 (+) 735 WP_179025913.1 cell division protein ZapD -
  FLM48_RS20170 (FLM48_20315) yacG 4582293..4582511 (+) 219 WP_028773314.1 DNA gyrase inhibitor YacG -
  FLM48_RS20175 (FLM48_20320) mutT 4582508..4582903 (+) 396 WP_179025914.1 8-oxo-dGTP diphosphatase MutT -
  FLM48_RS22825 - 4582990..4583115 (-) 126 WP_256870988.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45734.15 Da        Isoelectric Point: 9.9479

>NTDB_id=371234 FLM48_RS20150 WP_179025910.1 4578622..4579881(+) (pilC) [Shewanella sp. Scap07]
MATATAIKKSKKAAKNQPKVITYEWKGTNRDGKKTSGELRGVTVAEIKSQLKSQGVNPKLVRKKASPLFKLGDPKIKAMD
IAMITRQIATMLAAGVPLVTTIEMLGRGHEKVKMRELLATILNEVQAGIPLSDALRPHRQYFDDLYVDLVAAGEHSGSLD
AVFDRIATYREKAEALKSKIKKAMFYPAAVVLVAIGVTSLLLLFVVPQFEEIFAGFGAELPAFTQLVIKISEWLQASWYI
FLAAIIVGVFLFVRTHRNSQKFRDQIDTLVLKIPAVGPILHKAAMARFARTLATTFAAGVPLIEGLESAAGASGNYIYRS
ALLKVREEVMAGMQMNVAMRTTGIFPDMLIQMVMIGEESGGLDEMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGTIV
GGLIVAMYLPIFEMGKVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=371234 FLM48_RS20150 WP_179025910.1 4578622..4579881(+) (pilC) [Shewanella sp. Scap07]
ATGGCGACAGCTACTGCAATAAAAAAATCAAAAAAAGCCGCCAAAAATCAACCTAAAGTCATCACCTATGAGTGGAAAGG
TACCAACCGTGATGGCAAAAAAACCTCTGGAGAACTTCGCGGCGTTACAGTAGCAGAAATAAAAAGCCAACTTAAGTCCC
AAGGTGTGAACCCGAAGTTGGTGAGGAAGAAGGCTAGTCCACTATTTAAGCTAGGCGATCCTAAAATCAAAGCGATGGAT
ATCGCGATGATCACCCGTCAAATAGCGACCATGTTAGCAGCGGGTGTACCACTGGTGACTACCATTGAAATGCTCGGTCG
TGGCCATGAAAAAGTGAAAATGCGTGAATTACTGGCGACTATTCTCAATGAAGTACAAGCCGGTATCCCATTATCGGACG
CGCTACGACCTCACAGGCAGTATTTTGATGACCTTTATGTCGATTTGGTCGCAGCTGGTGAACACTCAGGCTCTCTCGAT
GCGGTATTTGATCGTATAGCAACGTACCGTGAAAAAGCTGAAGCACTTAAATCAAAAATTAAGAAGGCGATGTTTTACCC
GGCTGCAGTTGTTTTGGTGGCAATTGGTGTTACTAGCTTATTATTGCTATTCGTAGTACCACAGTTTGAAGAAATTTTTG
CAGGATTTGGCGCTGAGCTACCAGCCTTTACTCAATTAGTCATTAAAATATCCGAGTGGCTACAAGCCTCTTGGTATATC
TTTTTGGCTGCTATTATTGTTGGTGTGTTTTTGTTTGTTCGCACGCACCGCAACTCGCAGAAATTTCGCGACCAAATTGA
TACCTTGGTATTAAAAATTCCAGCAGTGGGTCCCATACTACATAAAGCTGCCATGGCGCGTTTTGCTCGCACATTAGCTA
CGACTTTTGCTGCGGGTGTACCTTTAATTGAGGGGTTAGAGTCTGCAGCAGGTGCATCGGGAAACTACATTTATCGTAGC
GCCTTACTCAAAGTTCGGGAGGAAGTAATGGCTGGTATGCAGATGAATGTCGCTATGCGCACCACTGGGATATTTCCGGA
CATGTTAATTCAAATGGTGATGATTGGTGAAGAGTCAGGCGGTCTCGATGAAATGCTCAACAAAGTCGCCAATATATACG
AAATGCAAGTCGATGATGCCGTAGATGGTCTCTCTAGCTTAATTGAACCTATCATGATGGTCGTTATAGGCACTATTGTT
GGCGGATTAATTGTCGCTATGTATTTGCCAATTTTTGAAATGGGCAAAGTCGTAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(85-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.479

97.613

0.551
  pilC Acinetobacter baylyi ADP1

51.106

97.136

0.496
  pilC Acinetobacter baumannii D1279779

50.123

97.136

0.487
  pilC Legionella pneumophila strain ERS1305867

50

96.42

0.482
  pilC Vibrio cholerae strain A1552

48.049

97.852

0.47
  pilC Vibrio campbellii strain DS40M4

45.906

96.181

0.442
  pilG Neisseria meningitidis 44/76-A

41.872

96.897

0.406
  pilG Neisseria gonorrhoeae MS11

41.872

96.897

0.406
  pilC Thermus thermophilus HB27

37.136

98.329

0.365

Multiple sequence alignment